AMCG00015890


Basic Information

Item Value
gene id AMCG00015890
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 28006084 ~ 28018896 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015890
ATGACTGAGATAGTGGAGAACAGGCCCTTTGCCGCCCAGCTAACAAATGTTTACTTCACCATATTTGCTCTCTTCTGCTTCAAGCTTTTTGTGAAGATATCCCTGAACATACTCACCCACTTCTACATTGTCAAGGGGAACCGGAAGGAGGCAGCCCGCATTGCGGCAGAATTTTATGATTTTGCCGAAGGACAAAGCTCCTGGGCAGACCGGTCCCCTCTCCATGAGGCGGCGAGTCAAGGTCGTCTCCTGGCGCTGAAGACTCTGCTTTCTCAGGGCTACAATGTGAACACTCTGACCATTGACCATGTCACTCCGCTGCATGAAGCCTGCCTAGGAGACCATGTGAGCTGCGCAAGAGCCCTGATCGAGGCCGGAGCCAATGTGAATGCCATAACCATCGATGGCGTCACACCTCTGTTCCATGCCTGTTCCTGCGGTAGTGCCACCTGTGCGGAGCTGTTACTGGAACATGGTAAAAGCAACTGTGTCGAAGCCTTGATTTCCTGGGGGGCTGACGTTGACCATGACATTCCACACCTGGGGACCCCCCTCTATGTAGCGTGTGCATCCCAGCAGCTGCAGTGCACTCGGAAACTACTGGATGGAGGAGCCAATGTGCAGAAGGGTAAATTCCTGGACACTCCTTTACACGCTGCGGCTCAGAAGAACAGCACGGAGATCGTCAAAGTGCTGCTGGATTTTGGCGCAAACATCAATGCCAAAAACGTAGAACTAAAGCGGCCTGTGGAGGCAGCCCCTCCCAGCAGCCCAGCGGAGAGATTCCTCCTGCTGTATGAAGCCACACCCACCTCACTGTGCCAGCTGTGTCGCCTGTGCATCAGACAGTGCATGGGCAGATCCAGAGTGCACCTCATTCCTCAGCTGCAGCTGCCCACCATACTGCAGAAGTTCTTACAGCACCGATAA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG:

id description
K10327 ASB5; ankyrin repeat and SOCS box protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015890 True 930 mRNA 0.54 7 28006084 28018896

Neighbor

gene id symbol gene type direction distance location
AMCG00015887 NA coding upstream 42971 27899397 ~ 27963113 (+)
AMCG00015886 NA coding upstream 165803 27817836 ~ 27840281 (+)
AMCG00015882 dctd,LOC107671033,LOC107550883,LOC106602441 coding upstream 1306655 26672744 ~ 26699429 (+)
AMCG00015877 NA coding upstream 1438526 26562721 ~ 26567558 (+)
AMCG00015876 NA coding upstream 1443980 26527110 ~ 26562104 (+)
AMCG00015889 NA coding downstream 18915 28037811 ~ 28040997 (+)
AMCG00015893 LOC106610164,LOC106602380 coding downstream 129998 28148894 ~ 28167077 (+)
AMCG00015896 glra3,LOC106610166,LOC106602381 coding downstream 320516 28339412 ~ 28372662 (+)
AMCG00015894 NA coding downstream 366018 28384914 ~ 28386688 (+)
AMCG00015897 NA coding downstream 378076 28396972 ~ 28399528 (+)
G101404 NA non-coding upstream 9138 27995810 ~ 27996946 (+)
G101387 NA non-coding upstream 336331 27669432 ~ 27669753 (+)
G101381 NA non-coding upstream 564841 27441027 ~ 27441243 (+)
G101340 NA non-coding upstream 1298983 26706876 ~ 26707101 (+)
G101320 NA non-coding upstream 1426113 26579713 ~ 26579971 (+)
G101486 NA non-coding downstream 427020 28445916 ~ 28446217 (+)
G101504 NA non-coding downstream 570677 28589573 ~ 28591059 (+)
G101555 NA non-coding downstream 1148039 29166935 ~ 29167213 (+)
G101556 NA non-coding downstream 1155881 29174777 ~ 29177324 (+)
G101558 NA non-coding downstream 1163635 29182531 ~ 29182869 (+)
G101400 NA other upstream 14070 27890552 ~ 27992014 (+)
G101275 NA other upstream 1628385 26373153 ~ 26377699 (+)
G101248 NA other upstream 1741776 26263915 ~ 26264308 (+)
G101061 NA other upstream 3140532 24865089 ~ 24865552 (+)
AMCG00015796 hspa12b,LOC107583310,LOC107697252,LOC107721672 other upstream 5322189 22678837 ~ 22683895 (+)
AMCG00015901 NA other downstream 558604 28577500 ~ 28580829 (+)
AMCG00015918 g3bp2,LOC106578160,LOC107714642,LOC106610282 other downstream 1605149 29624045 ~ 29652938 (+)
G101752 NA other downstream 2147132 30166028 ~ 30168289 (+)
G101870 NA other downstream 2785193 30804089 ~ 30809238 (+)
G101930 NA other downstream 3243565 31262461 ~ 31287766 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000049_05901108_05909136 ASB5B, ASB5 coding CI01000049 null 5900660 ~ 5909185 (-)