AMCG00015893 (LOC106610164,LOC106602380)


Basic Information

Item Value
gene id AMCG00015893
gene name LOC106610164,LOC106602380
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 28148894 ~ 28167077 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015893
ATGCTGTCCACTTCTGGGTGTTTCGAGTGCTGCATTAAATGCTTGGGTGGCATTCCCTATGCATCGCTGATTGCCACTATTTTGTTGTATGCCGGGGTGGCGCTGTTCTGTGGCTGTGGGCATGAGGCCCTCTCTGGGACCGTCACCATACTGCAGAACTACTTTGAGGTATATGTTATCTACGGTGTTGCGGCGGCGTTCTTTGTCTACGGGATTCTGCTGATGGTGGAAGGATTCTTCACAACAGGTGCCATCAAGGATCTCTATGGAGACTTCAAAATCACCACATGTGGAAGATGTGTGAGTGCCTGGttcaTCATGCTGACATACATCTTCATGTTGGCCTGGCTGGGAGTCACCGCCTTCACATCTCTGCCAGTCTTCATGTACTTCAACATTTGGACTATCTGCCAGAATACCACTGTTGTTGATGGTGCAAACTTGTGTCTGGATCTCCGCCAGTTTGGGATTGTCACTATAGGAGAAGAGAGGAAGGTGTGCACGGGATCTGAGAACTTCTACAAGATGTGCGAATCGAATGAGCTGGACCTGACGTTCCACTTGTTTATTGTCGCTCTTGCCGGAGCCGGAGCCGCAGTCATTGCTATGGTGCATTACCTAATGGTTCTCTCTGCCAATTGGGCTTATGTGAAAGACGCGTGCAGAATGCAAAAATACGAGGATATCAAATCGAAGGAAGAACAGGAACTCCACGACATCCACTCCACCCGCTCAAAAGAGCGCCTGAACGCGTACACATAAGACACACAGCCGCTGTCTAGTTCCTGCTTTGCTTCCTTTCCTGGGGGGTGGGTGGAGGGGTCAGTTACCTTTTTCTAAGCTTACAGGTATTGTCACTTTAAGGTGGCGTGGGTGACGCCCGTGTCCCCCTAGCTATATTACTGCTGACATCCATTTACCTCTTTTTGGGACCGTTTTGTTCTTCCCTGCTTATCCTTTTAATGTCCCTTCAAAATGCAATCCATCTTAGTTCTCAAGTGAGTGAATTACCCACCATAACTCAGAGTGCCATCGCTTTGTCACGTCATCTTTTTTAAAGTCACCTCGACCGGGCggtgttttatttatcttcattttGGTGGGGAGTGATTGGGGTGAGAGAGTTTCTAtcgcttttattttttgggttCACCTTGTTGTATAACggatttgtactttttttttaatgctcatTTTACAGGGCTCTGGTCAGGAGTAGGTCGTCGCTTTTTTCGAATGACGGGACCTACATTTTACCAaatttgtatgatttacagTCAGATTATATAGGCTTCCAAGTGTTACATAACCAACAGTATTATGATCATGTACAGATTCTTTCCCAGCAAATTCTGTGTTAGTTGGGGGTGCTTgtgataaaaaaagaataaaacaaaaaaaaaatcgaagTTAATTTCACACTCTGTCGTAGCTTGACCAAATTGACAGGAACTTGGGCTGTCTGTTAACTAACTGTGCCAAGCCCTTCAAAACGGGACAACAATCACTGTTCAATCCAGCACTTCTGTAATCGTGAATGGGCTTAATAAATATCAGTGGTAACTCTTCAGGAATACGGATACCATATTGACCATGGGAACGACGGTAATTGAAATCATTTACAATTGATCAGCCTTCGAGGATTTGCCTTGGACAGACTCTGTAGATCATTGATTTTCCATTCATTGCAAGCCATATTTACACAtgcaaatcatgtttttattctgattaattttttctcttcttttacagtgagtatttttaaatgcaattatttttttttcagtattctgcactgtatatatatataaatatacatatgttaaaaaatagaagaaaactTCAGTTTCAGGTCATTTCACAGAAGCTTAAGAAAACATCTCAGTGTTTGACGTCCAGGTGATATTCTTGAGAAAGCCATTTGCTCGttgagataaaataaataaagacaaaattgTGACTTAATTAAGGTGGTAAAGAGATGATATTCCACTCCTGTGGTGTCGTTTCTCCAGAGTGAAAAGTGAATATCATAATTTGAGAGCTAATAAACTTCTTTGTTAAACTACTTACTAGACGACATTAAATGTCACTAATAAAATGTTATCCTTAATTATGGACCAAACTTGATGTTTTGGATCTGTCTTGCCTACTTCTACTGCCATAGGTTTGCAGTACAGTGtctcatatttttcttttttgtggccTGACAATACTTGTGTTGTCAGTGTTTCAAAAGCTAGTTTTGTGCACTTATTGAACCATCGTGAGCTCTTTCTTGGTGTAAGTGCATTTCTATTAAAACAAGAGTTGAAATCTCTCTGTACTGTTACTAGTCATGCAACATTGGTTTTTAACAAATCTTGTATTAGGTAAAGGCCGTAAATATAGTTGTTATTTGTGGCATGGTTATGCATTAAATGGTAATAGATTTACTGATTCaaacgttttttattttattttctttctttctttttttttacacttaGACTGTCTTGCTGGGTCAACTGTTTTATGATATGTGCAGTAATTACAGTTCCTATGCTAACAGTATTATGCTAAATCTCTTTATGATATTAGGTTGTAGTGTTTGATTTGTGTCTTAATATAGTTTGTGATGATTTTCAAACCATGGTCTTAAATTGATACTTGTAATGATGTTACGTATTCAGTATTAACCTGATGATGCTTTTGGCTTTCTCCTTGTATTAGTCTTTTGTACTTTCACAAAGAATGCTTTGTAGCAGGCTGtaaaattaatctgttttgtaCATAAATGTGCCAACAGCTTGACGGTGGCTTTTTTGAACTGTAGGAACA

Function

NR:

description
PREDICTED: neuronal membrane glycoprotein M6-a-like isoform X1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015893 True 2820 mRNA 0.39 7 28148894 28167077

Neighbor

gene id symbol gene type direction distance location
AMCG00015889 NA coding upstream 107897 28037811 ~ 28040997 (+)
AMCG00015890 NA coding upstream 129998 28006084 ~ 28018896 (+)
AMCG00015887 NA coding upstream 185781 27899397 ~ 27963113 (+)
AMCG00015886 NA coding upstream 308613 27817836 ~ 27840281 (+)
AMCG00015882 dctd,LOC107671033,LOC107550883,LOC106602441 coding upstream 1449465 26672744 ~ 26699429 (+)
AMCG00015896 glra3,LOC106610166,LOC106602381 coding downstream 172335 28339412 ~ 28372662 (+)
AMCG00015894 NA coding downstream 217837 28384914 ~ 28386688 (+)
AMCG00015897 NA coding downstream 229895 28396972 ~ 28399528 (+)
AMCG00015895 fbxo8,LOC107670846,LOC107752227 coding downstream 264961 28432038 ~ 28441312 (+)
AMCG00015900 hand2,LOC107558779,LOC107676684,LOC106610170,LOC106602386,LOC107752229,LOC107552491 coding downstream 373973 28541050 ~ 28543529 (+)
G101404 NA non-coding upstream 151948 27995810 ~ 27996946 (+)
G101387 NA non-coding upstream 479141 27669432 ~ 27669753 (+)
G101381 NA non-coding upstream 707651 27441027 ~ 27441243 (+)
G101340 NA non-coding upstream 1441793 26706876 ~ 26707101 (+)
G101320 NA non-coding upstream 1568923 26579713 ~ 26579971 (+)
G101486 NA non-coding downstream 278839 28445916 ~ 28446217 (+)
G101504 NA non-coding downstream 422496 28589573 ~ 28591059 (+)
G101555 NA non-coding downstream 999858 29166935 ~ 29167213 (+)
G101556 NA non-coding downstream 1007700 29174777 ~ 29177324 (+)
G101558 NA non-coding downstream 1015454 29182531 ~ 29182869 (+)
G101400 NA other upstream 156880 27890552 ~ 27992014 (+)
G101275 NA other upstream 1771195 26373153 ~ 26377699 (+)
G101248 NA other upstream 1884586 26263915 ~ 26264308 (+)
G101061 NA other upstream 3283342 24865089 ~ 24865552 (+)
AMCG00015796 hspa12b,LOC107583310,LOC107697252,LOC107721672 other upstream 5464999 22678837 ~ 22683895 (+)
AMCG00015901 NA other downstream 410423 28577500 ~ 28580829 (+)
AMCG00015918 g3bp2,LOC106578160,LOC107714642,LOC106610282 other downstream 1456968 29624045 ~ 29652938 (+)
G101752 NA other downstream 1998951 30166028 ~ 30168289 (+)
G101870 NA other downstream 2637012 30804089 ~ 30809238 (+)
G101930 NA other downstream 3095384 31262461 ~ 31287766 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location