AMCG00015894


Basic Information

Item Value
gene id AMCG00015894
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 28384914 ~ 28386688 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015894
ATGGCTCTACATGGCAAAGTGGCTCTGGTGACTGGAGGAGCGCAAGGCATCGGCAAAGCAGCTGCCGAGATGCTCCTGAAGAATAGCTCAAAGGTGGCTCTCGTAGACCTGAATAAAGAAGTGGGGGAGGACTGCGTGAAAACACTGACTGAAGAGTTTGGAGCcgaaaacttgtttttttttgagTGCGACGTAACTGACTGGGGGCAACTGCAAGACGCTTTCAAGAAAACAGTTGAAAAATTTGGACGTTTAGACATTGTCATCAACAACGCGGGTATCAATAATGAGAAAAACTGGGAGAAGACAATTGAAGTGAATTTGACCTCTCTAATTAAGGGCACATACTTTGGCTTGGAGCACATGAGTAAAGAATATGGCAAAGGAGGCGGCGTAATCATAAATGTATCCTCCATGGCG

Function

GO: NA

KEGG:

id description
K00069 HPGD; 15-hydroxyprostaglandin dehydrogenase (NAD)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015894 True 420 mRNA 0.46 4 28384914 28386688

Neighbor

gene id symbol gene type direction distance location
AMCG00015896 glra3,LOC106610166,LOC106602381 coding upstream 12252 28339412 ~ 28372662 (+)
AMCG00015893 LOC106610164,LOC106602380 coding upstream 217837 28148894 ~ 28167077 (+)
AMCG00015889 NA coding upstream 343917 28037811 ~ 28040997 (+)
AMCG00015890 NA coding upstream 366018 28006084 ~ 28018896 (+)
AMCG00015887 NA coding upstream 421801 27899397 ~ 27963113 (+)
AMCG00015897 NA coding downstream 10284 28396972 ~ 28399528 (+)
AMCG00015895 fbxo8,LOC107670846,LOC107752227 coding downstream 45350 28432038 ~ 28441312 (+)
AMCG00015900 hand2,LOC107558779,LOC107676684,LOC106610170,LOC106602386,LOC107752229,LOC107552491 coding downstream 154362 28541050 ~ 28543529 (+)
AMCG00015902 hmgb2,LOC104945199 coding downstream 199737 28586425 ~ 28588280 (+)
AMCG00015908 NA coding downstream 692741 29079429 ~ 29107579 (+)
G101404 NA non-coding upstream 387968 27995810 ~ 27996946 (+)
G101387 NA non-coding upstream 715161 27669432 ~ 27669753 (+)
G101381 NA non-coding upstream 943671 27441027 ~ 27441243 (+)
G101340 NA non-coding upstream 1677813 26706876 ~ 26707101 (+)
G101320 NA non-coding upstream 1804943 26579713 ~ 26579971 (+)
G101486 NA non-coding downstream 59228 28445916 ~ 28446217 (+)
G101504 NA non-coding downstream 202885 28589573 ~ 28591059 (+)
G101555 NA non-coding downstream 780247 29166935 ~ 29167213 (+)
G101556 NA non-coding downstream 788089 29174777 ~ 29177324 (+)
G101558 NA non-coding downstream 795843 29182531 ~ 29182869 (+)
G101400 NA other upstream 392900 27890552 ~ 27992014 (+)
G101275 NA other upstream 2007215 26373153 ~ 26377699 (+)
G101248 NA other upstream 2120606 26263915 ~ 26264308 (+)
G101061 NA other upstream 3519362 24865089 ~ 24865552 (+)
AMCG00015796 hspa12b,LOC107583310,LOC107697252,LOC107721672 other upstream 5701019 22678837 ~ 22683895 (+)
AMCG00015901 NA other downstream 190812 28577500 ~ 28580829 (+)
AMCG00015918 g3bp2,LOC106578160,LOC107714642,LOC106610282 other downstream 1237357 29624045 ~ 29652938 (+)
G101752 NA other downstream 1779340 30166028 ~ 30168289 (+)
G101870 NA other downstream 2417401 30804089 ~ 30809238 (+)
G101930 NA other downstream 2875773 31262461 ~ 31287766 (+)

Expression


Co-expression Network