AMCG00015902 (hmgb2,LOC104945199)


Basic Information

Item Value
gene id AMCG00015902
gene name hmgb2,LOC104945199
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 28586425 ~ 28588280 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015902
ATGGTCAAAGGGGATCCCAACAAGCCGCGGGGCAAGATGTCCTCCTACGCCTACTTCGTGCAGACGTGCCGGGAGGAGCACAAGAAGAAACACCCGGACACCTCCGTCAACTTCTCCGAGTTCTCCAAGAAGTGCTCCGAGAGGTGGAAGacGATGTCGGCCAAGGAGAAGGGCAAATTCGAGGACCTGGCCAAGACGGACAAGGTGCGCTACGAGCGGGAGATGAAGACCTACATCCCTCCTAAGGGCGAGAAGGCgagcaagaagaagaagaaggatcCCAACGCCCCCAAACGGCCACCATCTGCCTTCTTCCTGTTCTGCTCCGAGCACCGCCCGAGAGTGAAGGGCGAGCATCCCGGGATCTCCATCGGGGACATCGCAAAGAAACTGGGAGAGCTGTGGTCCAAGCAGACGCCCAAGGACAAGGTTCCCTTTGAGCAGAAGGCCGTGAAGCTGAAGGAGAAATACGAGAAGGATGTCGCCGCGTACCGCGCCAAGAGCAAGGTGGAGACCGGTGCCGTTGGCAAGAAGGGCCCCGGCAGGCCGACCGGATCCAAGAAGAAGGCCGAGCCTGAGGATGACGATGACGATGAAGATGACGACGACGAGGAAGATGACGATgacgacgatgatgatgatgacgatgacgAGTAAGCTG

Function

symbol description
hmgb2 Enables DNA binding activity; signaling receptor binding activity; and transcription coactivator activity. Involved in several processes, including positive regulation of myeloid cell differentiation; regulation of nucleobase-containing compound metabolic process; and response to bacterium. Located in several cellular components, including condensed chromosome; nuclear lumen; and perinuclear region of cytoplasm. Part of protein-containing complex.

NR:

description
PREDICTED: high mobility group protein B2

GO: NA

KEGG:

id description
K11295 HMGB2; high mobility group protein B2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015902 True 661 mRNA 0.58 4 28586425 28588280

Neighbor

gene id symbol gene type direction distance location
AMCG00015900 hand2,LOC107558779,LOC107676684,LOC106610170,LOC106602386,LOC107752229,LOC107552491 coding upstream 42896 28541050 ~ 28543529 (+)
AMCG00015895 fbxo8,LOC107670846,LOC107752227 coding upstream 145113 28432038 ~ 28441312 (+)
AMCG00015897 NA coding upstream 186897 28396972 ~ 28399528 (+)
AMCG00015894 NA coding upstream 199737 28384914 ~ 28386688 (+)
AMCG00015896 glra3,LOC106610166,LOC106602381 coding upstream 213763 28339412 ~ 28372662 (+)
AMCG00015908 NA coding downstream 491149 29079429 ~ 29107579 (+)
AMCG00015912 NA coding downstream 602826 29191106 ~ 29195801 (+)
AMCG00015911 NA coding downstream 664606 29252886 ~ 29259988 (+)
AMCG00015913 NA coding downstream 752204 29340484 ~ 29352375 (+)
AMCG00015915 NA coding downstream 812231 29400511 ~ 29409924 (+)
G101486 NA non-coding upstream 140208 28445916 ~ 28446217 (+)
G101404 NA non-coding upstream 589479 27995810 ~ 27996946 (+)
G101387 NA non-coding upstream 916672 27669432 ~ 27669753 (+)
G101381 NA non-coding upstream 1145182 27441027 ~ 27441243 (+)
G101340 NA non-coding upstream 1879324 26706876 ~ 26707101 (+)
G101504 NA non-coding downstream 1293 28589573 ~ 28591059 (+)
G101555 NA non-coding downstream 578655 29166935 ~ 29167213 (+)
G101556 NA non-coding downstream 586497 29174777 ~ 29177324 (+)
G101558 NA non-coding downstream 594251 29182531 ~ 29182869 (+)
G101560 NA non-coding downstream 597825 29186105 ~ 29186327 (+)
AMCG00015901 NA other upstream 5596 28577500 ~ 28580829 (+)
G101400 NA other upstream 594411 27890552 ~ 27992014 (+)
G101275 NA other upstream 2208726 26373153 ~ 26377699 (+)
G101248 NA other upstream 2322117 26263915 ~ 26264308 (+)
G101061 NA other upstream 3720873 24865089 ~ 24865552 (+)
AMCG00015918 g3bp2,LOC106578160,LOC107714642,LOC106610282 other downstream 1035765 29624045 ~ 29652938 (+)
G101752 NA other downstream 1577748 30166028 ~ 30168289 (+)
G101870 NA other downstream 2215809 30804089 ~ 30809238 (+)
G101930 NA other downstream 2674181 31262461 ~ 31287766 (+)
AMCG00015959 NA other downstream 3145487 31733767 ~ 31746116 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G40521 hmgb2,hmgb2a,LOC107670798,LOC107752228,LOC102792727,LOC100707400 non-coding NC_047597.1 CM018543.1 3838818 ~ 3840942 (-)
bowfin (Amia calva) G38478 NA non-coding CM030125.1 CM030125.1 2031837 ~ 2032211 (-)