AMCG00015908


Basic Information

Item Value
gene id AMCG00015908
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 29079429 ~ 29107579 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015908
gaaaaatacatttcccagaAGCCCGCAGCGGAGCAGTGCGACGCAGACGACGCACGACGTGCCGACGCAAGCCCTACCATCCCATTCCTGTTGGGCCGGCCATATTGGAATCTGAAGTCTGGCGAGCTCTCTGGAGGTACAGAGTGACTGGTTATTTTGGATCCTGTATAACAACCTTCCCAGGGAAGAGCCGAGCCAGGCGGTGTCCCGACAGCACACTGTCCCATAGACGGCAGGTTGCCTTTGACTGGAGGGGGAGATGAGCCCGACCGACGCTAAGAGAGGAGCTAAACGCAGGAAGAACAAGCGGGGCGGTGGCAGCAGCAGTAGCTGTAGCAGTGCTGTGAGCAGCATCGCTGGCAAGGCCGGGGCTTCATCCTCGGCCCGGAGTCCCCAGGCACCCGGAACCCCGGCAGCTGCCATTAGCCTCCTGACAGCAGGGACCCCTGGGAGCGGCGGCCCCGGGAGCACCGCGGCCCTGAACGGAGAGGTGTCTGTAAACGGCACGCAGTTCTCGGAGGGTCTCATGAATTCGGACTTCACGGGTGTCCTGCAGACCCCCTTCACCTTCGGCTTGGGGCAGAGGGCACCGTACACCACCGGGGAGCGCTGCCTCTTGTGCAGGAGTGAAAGGAAAGACAACTCCCTGTTGGAGACGGGGGTGTCCAGTTCCAACAAGGTCGCGCTTCCCACATCTCCAAAACCCAACAGCATGCTGCAGCTCCCTCTGTGGGTGTGCCCGGACTGCCGGCGCACGGTGGAGAAGGAAGAGCGGCACGCTGCCCTAGAGCAGTCTCTCGTGAACCAGGACTTCTTATTGCACATGCCTGTTGGGAACAGCGGGTCACTACAGGAGTCTGTGGGAGGAGGGAGGCTAGCTGTCGGAGCTCAGACTCCGCCCACCCCTGACCTCAGCGCTCCTGCCGCCACAGAAACTGTGTGCAGCTGCGAAGCATGCAACGAGCGAAGGGAAATTTCAGCCGAGTCGGAGAGGGAGTCTCAGCAGCTCCAGAACTACTGGTCTGAAGTGCGCTACATGGTCCGGTGCATCTATCGCCAGACTGGAACCCCTCTGGCAGAGGACCAGGACCAGCCCCTGGATCGAGACAAGGAAGGCATGAAAGAGCTGGTCGACAGGCTTTGTGAAAAGGACCCCTACCAACTGTACCAGCGGCTCGAGCAGCAGGCCCGAGAGTATGTGCTGGAGATGAAGGTCCGTCTGCTCAAGCACCTGTCTGTGGGTTCCAAGGCCGCCTCGGCCGTGCAGGGCCCCCCTCAAGCACACCAGTTCGTTTCGCTGCTCCTGGAGGAGTACAGCGCCCTCTGCCAGGCCGCCCGCACAATCAGCACCTTCCTGCTCACTCTGgAGAACGAGCATTTAAAGAAATTCCAGGTGACCTGGGAGTTACACAACAAGCACCTTTTTGAAAACCTTGTGTTTTCAGAGCCTCTTCTACATAACAGTTTACCAACCCTAGTTGCACAGTTAAGGAGAGGCACCGCGTCGCACGACTCCTACAGCGAGGATATGTACAGCGGTCTGCTGCAGAGCTACCACCAGCTGGACCAGGAAATGAACGTAGTCGCTGTCAAGTGGCTGGAGTGTGAGAAACGAATAGACGACTATGTCGACGAACAGATGTCATTAAAATCAAAGCAACGCATGCTGAAAGAGGACTGGGAGTTTTTTAAACAGCGACGGTTTATAGAAGAACAGTTAACGAACAGTAAGAAATCGTTAACGGGAGACAGTAACTTCACAGACACAATGAGGCACATGCTGTCATCTAGGCTGAGCATACCAGACTGTCCTAATTGCAATTACAGACGAAGGTGTACCTGTGATGACTGCAGTCTTTCGCACATCCTGACGTGTGGCATCATGGATTCCCCCATCACTAACGACCTTCACGTCACCAAATCGCCCCTGCAGGGGGAGTCCGCCCCAGACTACCTCTCCGAAGTGCACCCTCCCAGCATGTCCTCGGCCAGCTCTGGGTCGGGCTCCAGCTCTCCCATCACCATCCAGCAGCACCCGCGGCTCATCCTCGCAGACAGCGGCACGGCCCCCACCTAcGGCAGTGATGACGACGACGTGCCCCCGCTGTCAGCGAAGTTCAGTGACATTTACCCGTTGAGTAACTACGATGACGCCGAGGTAGTGGCCAGCATGAATGGGCTTCACGGCCAGCTAAATGGTGGGGGAGAAAACATGGCGCTGAAAGATGAGTCTCCgaggggcagcagcagcagcagcagcagctcgtCGGAGGCGGACGACGAGGAGGCCGACGGAGAGAGCGGCGGGGAGCCCCCGGGGCCGCAGGACGAGCTCTCCCCAGGGAGCAGGGGCCCCACCAAGGATGTCCTGCGCTGTGACAGCCCTCCCCCGTCCTACCCCAACCAACAGCTCAGTGACCAGGTGCAGCACGCGTGTGAATGTCACGTCTGCAAGCAGGAAGTGTCTGGCATCAACGGCACCGCCCTGTCCACCGGGAGGCTCCACCCGGGACACCAGTTCTTAACGGAGAAGACGTCGCACCCGGCTCTGCACCTGTATCCACACATCCACGGGCATCTACCACTACACACCATCTCGCATCTCCCCCGGCCTCTCCTCCACCCTACTCTCTACACTAACCCACCCTTCACACACAATAAGACTCTCCCATCAGCCCCAACGTCTAACCATACCGGCAAACACCAAGTATTCAACGCCTCTCTCCAGGACCATATTTATCAGAACTGTTTTGGCAACACTACAGACTGGAACAGTTCGCTGCCCCCGTCCCTGAAGTTCGAAAACATCTGGGAAACGACGGTCATGGAAAACTGGAACCCGGCAATCTTCCTGCAGGAGCCTCTCTCAGACCTGAAGGAGCAGAATAATGTCGCTGGGCGGGGCTTGGGCAGGAGGGTGCTGTCCCTGACGTTGCCTTGTTTCAATGAAGGTGACATGCTTGGACCGGCTCTCCCGGAGATCAGGCCGgaagcccccccaccctcctccccCGGCACGGACCCCACCGCCCCTGGTACGGAACCCAAGGAGAAGAAGAACACGGCCAAGAAGAAATGCCTCTACAACTTCCAGGACGCCCTCATGGAAGCCAACAAAGTGGTGATGGCCACGTCGTCGGCCACCTCCTCCGTCTCCTGCACAGCCACCACTGTCCAGTCAAGTAATAATCAGATCAAAGTTTCATCTAAAAGACCCACTTCTTTAGGTGAGGTATTTCACAATATAGGTAAAGAGGACCATAGACACTCAACTCCAGTCGCACCTAGAAATAGCCCAACAGGTTTAGCCACACTTCCTCCGCTAACCGCCACAGCCCTGTCGCCGGCCCCTGGCCCTCATCTCCCCAACATCGGAGCCCAGCCCTTCCCAAAGACAGCCGCCACAGCCCCAGGCTTTGTGGACCCTCACCCAGGACTGTGGCCCTCGCCCGCTGCACCCCCTCCTGCCACCACCGAGGGCTCTCTGAGTGCCCCGCCAAGCGTCTGCAGGTTTGTCCCTCCTCCGGCATCTGGGGCCTTAGTGGGGTGCATcgATCCGGACTGCGAGGGGCACCGGTGTGAGGGCAGCGGCGCGTACGGCCATCAGCACTACGACGGGGAGGACAGCCAGGACGACGACAGCTGCTCTGAGCACAGCTCCagcacctccacctccaccaaCCAGAAGGAAGGGAAGTACTGCGACTGCTGCTACTGTGAATTCTTCGGCCACGGCGGGCCTCCAGCGGCGCCAACAAGTAGAAACTATGCAGAGATGCGTGAGAAGTTACGCCTGAGGCTAACGAAGAGGAAAGAGGAACAGCCAAAGAAGGACGACCAGCTCCCGGACAGAGAGAGCGTGGAAGACCATCGCAAGGTAGAAGACCTGCTACAGTTCATCAACAGCGCTGACTCCAAACCCGTCAACAGCTCCCGGGCGGCCAAGAGAGCGCGGCACAAACAGAAGAAGATGGAGGAGAAGGCCCGGTTGGAGGCGGAGGCCCGAGAGAGGGagcggcagcagcagctcctggaAGAGCAGCGGCGCCGGGAGGAGGAGACGCTCAAACAAGAGATCCTGCGGCTCCaggagctgcagcagctgcgggcggccaagaagaagaagaaggagcgGGCCAGGGAGGCACAGAGGGCGGAGGCCGCGCCCCGCAGCCCGCAGCCGCTAAAGGAGAGCGCGCAGAACGCCCTGGAGAACTTCAAGAATGGGAAGCCGCCGCAGCTGCTGCACAACTTCATACACTTGCCCGGCCCCCCTGCCCGGCCGGCCAGAGCGGAGCAGCGTCCGGCCCTGGAGTTGACAGCGGCCAAACAGAGCCTCACGAACGGCAAAGACTGTAAACAGCCGCCGCCGCCCCCGCTCGATCCGGCGCCGAACCAGAGGCCTGCGAGGCTCAAGCAGGTCGAGGCCCCCGCGCCCCCGGAGCCGGCCGCCCCCGCGCACAGGGAGCTGAACGGGAAGTCCAAGCCCGAGCCTAAGCCCGCCACCGACGCCCCGCTTGAGgggaagaaggaggagaagaccGGCAGCCCCCACGGCAGGAAGCAGCTGAACCACGTGCAGGAGGAGAGGGCTCCCCTGGTGGCTGAGGCGGCCCCCCAGCCAGAGCAGCTACAGCAGAGCAGCGGCACTAAGCCCGTCACCGCCGAGTCCCCGCAGCCCAAAGGAAGAGCCAAGAAAGGCAAGAAGAAGAAGGGAGATAAGCTGAGCAACTCTATAGGGAAGCTCATGTATGACCGCAGTCTAGACAGTGACCAGAACGATCTCTTTCACTCCCTAGATGATGTGTTCCTGCCCAAAGACATCGACCTGGACAGCGTGGAAATGGATGAGACGGAGAGAGAAGTGGAGTATTTCAAAAGGTTTTGCTTGGATTCTGCTCGACAGACTAGACAGCGGCTCTCCATCAACTGGTCAAACTTTAGCTTGAAGAAAACCACATTTGCTGCGCACTGTTAACCGTTGGGAAAGACTTGGGCAGGAACCAATCAATGACTGCTGACTCAGCCCTGCTGTGCTCAAAGCTACTCTGGCCCCCAGGCCTCTGCTGCCTTGCCTTGTCCTTGTTGCTGCGAGGTTCTGAGAAGAACCCATTTGGCCTGATATTcttgcagaaattaaaaaaacaaaaaaaaacaaaaaaaaacaaaagctactTTCTACCTGAATCTGTTTGCTTGTGTGCTTGTAGTCTGTGAGCGAGACCTTTTTCTCTTGACTGTAGCCACGTCCCGACAAAAGCTAGGCCTTCAACAGAAAAAGGCGTTTCCGACTTTTACCTATTCGGTCTGGCTTTTCCTCGGCCTATAGTCATCCAGGCTGCTTCCTTTTTGTTTGGATGAAGGCCCTCCAAAAGGCAGAAAGATGGAAAAAAGCAATTACACGACAACAATGACAACAGAAACGATTTCACAATTACCGTGTCTTCTGTCACACATGCATCCAGCACTTCGCTCAGATTACTGACACGGGAAGGGGCTTGATCAGTATCCAGTCTACTTCGCTCCagctcccccccacacacccaaGGTTTCTTAAGAAAAGGAAGGAAGGGTAATACttgacaatacattttctttagttCTGTTTCACAATCCACTGTTTAAAAAGTGTACAAGTTAcgctctgtgtttatttttctttttgacttGTAGCCAGCTTGTATCAGAATACGTGCagaatggaatttaaaaaagaagaagaaaaaaaagaacaatactCACACTATCAATCTGTTATagagtgtatattgtattaaCACTGAAGCCAAACTGGCTACTTTTTTAACATATTGttaagtaatattaaaaaatcttgtctttcttttttgaaagATGGAATACATTAGTATGGCAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015908 True 5876 mRNA 0.57 23 29079429 29107579

Neighbor

gene id symbol gene type direction distance location
AMCG00015902 hmgb2,LOC104945199 coding upstream 491149 28586425 ~ 28588280 (+)
AMCG00015900 hand2,LOC107558779,LOC107676684,LOC106610170,LOC106602386,LOC107752229,LOC107552491 coding upstream 535900 28541050 ~ 28543529 (+)
AMCG00015895 fbxo8,LOC107670846,LOC107752227 coding upstream 638117 28432038 ~ 28441312 (+)
AMCG00015897 NA coding upstream 679901 28396972 ~ 28399528 (+)
AMCG00015894 NA coding upstream 692741 28384914 ~ 28386688 (+)
AMCG00015912 NA coding downstream 83527 29191106 ~ 29195801 (+)
AMCG00015911 NA coding downstream 145307 29252886 ~ 29259988 (+)
AMCG00015913 NA coding downstream 232905 29340484 ~ 29352375 (+)
AMCG00015915 NA coding downstream 292932 29400511 ~ 29409924 (+)
AMCG00015914 NA coding downstream 374690 29482269 ~ 29486582 (+)
G101504 NA non-coding upstream 488370 28589573 ~ 28591059 (+)
G101486 NA non-coding upstream 633212 28445916 ~ 28446217 (+)
G101404 NA non-coding upstream 1082483 27995810 ~ 27996946 (+)
G101387 NA non-coding upstream 1409676 27669432 ~ 27669753 (+)
G101381 NA non-coding upstream 1638186 27441027 ~ 27441243 (+)
G101555 NA non-coding downstream 59356 29166935 ~ 29167213 (+)
G101556 NA non-coding downstream 67198 29174777 ~ 29177324 (+)
G101558 NA non-coding downstream 74952 29182531 ~ 29182869 (+)
G101560 NA non-coding downstream 78526 29186105 ~ 29186327 (+)
G101638 NA non-coding downstream 470950 29578529 ~ 29595891 (+)
AMCG00015901 NA other upstream 498600 28577500 ~ 28580829 (+)
G101400 NA other upstream 1087415 27890552 ~ 27992014 (+)
G101275 NA other upstream 2701730 26373153 ~ 26377699 (+)
G101248 NA other upstream 2815121 26263915 ~ 26264308 (+)
G101061 NA other upstream 4213877 24865089 ~ 24865552 (+)
AMCG00015918 g3bp2,LOC106578160,LOC107714642,LOC106610282 other downstream 516466 29624045 ~ 29652938 (+)
G101752 NA other downstream 1058449 30166028 ~ 30168289 (+)
G101870 NA other downstream 1696510 30804089 ~ 30809238 (+)
G101930 NA other downstream 2154882 31262461 ~ 31287766 (+)
AMCG00015959 NA other downstream 2626188 31733767 ~ 31746116 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000049_05040459_05065623 FAM193A coding CI01000049 null 5039783 ~ 5067053 (+)