XLOC_006140 (CU681845.1)


Basic Information

Item Value
gene id XLOC_006140
gene name CU681845.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 35483618 ~ 35522176 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012086
AATGAGCGATTCGTTTTCGTTGTAAACATTGTTTAATCGTGGTTGGTAAATTCTGAGGTCTGAAGATACACTAATCTGGCTCAATGTCCATAATTGACGACTGAGGAGTATTGAGATTACCTTTGGAAGTAGTGCAGGCAGAAGGTCCAGAGCatcaggtgtttcccagtgccgTGGTTTCCATCGGTGGTCATCATCAAAAGCAAGGGCACCAGTAAAGCTGGAATCTCCTGGAGGAACCACGCTAGCCTTGCGGGCACCATCATGGAGCTGCCCGAGGTGTCCACGTAGCGGCCATAGGCAGCGTGAGACTTCATGAGACAAATAAAGTGCATTACCCCACCCAGGATCATCCCTAAACTCAGGCCCCGCACGAGGAGCTCCTGACACTGCATTGGAGGTCGAGTATCCGTCCGTTTTCAAACCAGGTATGAGCCTAATGCTGTATCTCCCCTCTTAACCCCTCAGCAGATTTGCGCAAACACAGCGTCTAAAAGCAGCTCCTCCCCAAAAAAAAGCAAGGCGAGAGTGGAGTCCTGACCGTGCTACAGCTTGCTGAAATGATGGAGGTTGTTACCTGCTGAAGGCACGATCATATATATTTATGCTCCAAAAGATTCAACAGAGCTAAAAAAACTTAAAGCGTGCAAATGGACACACACCCCAATGGCAGAAGTCAGAGGAAATGATGAAGAGATTGGAGGGGTCAGCCAGGTCGTACAGTGGCGTTCTGTAGACCTCGGCGGGGGAGAGGGCACAGCGAGACAGCGGCACGTGGTGAGAGGGGCCGAGAATGAACACCCTCCG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000092946

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012086 True 807 lncRNA 0.51 5 35483618 35522176

Neighbor

gene id symbol gene type direction distance location
XLOC_006139 mkks coding upstream 1775 35472803 ~ 35481843 (+)
XLOC_006138 jag1b coding upstream 93523 35339182 ~ 35390095 (+)
XLOC_006135 NA coding upstream 498705 34752174 ~ 34984913 (+)
XLOC_006137 CR376850.2 coding upstream 513973 34969519 ~ 34969645 (+)
XLOC_006136 CR376850.1 coding upstream 600248 34883246 ~ 34883370 (+)
XLOC_006141 wdr27 coding downstream 6431 35528607 ~ 35610118 (+)
XLOC_006142 thbs2a coding downstream 113496 35635672 ~ 35677353 (+)
XLOC_006143 psme4a coding downstream 167573 35689749 ~ 35744963 (+)
XLOC_006144 gpr75 coding downstream 223396 35745572 ~ 35748676 (+)
XLOC_006145 agpat4 coding downstream 243141 35765317 ~ 35788217 (+)
XLOC_006133 CR524481.1 non-coding upstream 1057253 34426248 ~ 34426365 (+)
XLOC_006116 NA non-coding upstream 2378390 33104911 ~ 33105228 (+)
XLOC_006149 NA non-coding downstream 466979 35989155 ~ 35995167 (+)
XLOC_006160 NA non-coding downstream 2016477 37538653 ~ 37544321 (+)
XLOC_006162 BX005106.1 non-coding downstream 2152002 37674178 ~ 37674294 (+)
XLOC_006163 BX322660.1 non-coding downstream 2628341 38150517 ~ 38150637 (+)
XLOC_006165 NA non-coding downstream 2703900 38226076 ~ 38284199 (+)

Expression


Co-expression Network