AMCG00015921


Basic Information

Item Value
gene id AMCG00015921
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 29745428 ~ 29761435 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015921
GGGAGATCAGACATGTACTGCTGGGGCGACAATGCGAGTGGCCAGCTGGGTCTGCAGCTGCCAGACCCCGATAAAGTGGTCCCGGTTCCCACGGAAAGCGCCTGCGTGCCGGGCAGCACCGTGGCGCACATCGCGGCGGGACAGCGGCACAGCGTGTTCCTCACGGCGGGGGGAGCCGTGCTGTCCTGCGGGGGAACTGCCGAGGACAGCTGGGGAGGCAGATACACAGGAGCCCCTTCGAACCACTGCCTGGCCGTCTGTGGGTCGGGTCAGGTTTACTCCTGGGGCCAAGGCTCTGAGGGGCAGCTCGGGATTGGTGGTTGCAAGAAAGGTCTTCTGAAGCCCAGAATAATTCAAGCCCTCGGGGGAATACAAATTTGTCAGGTGGTGTCTATCTCCGGAGCCCCAGTGACCCGGGTCTGTGCCGGGGCAGAGCACAGTTTCGCCATCTCACTCTCGGGGGCGGTGTACGCTTGGGGCGCCAACAACGCAGGGCAGCTGGGAATCAACAGAGTGGATGAGACAGGCAGGTTCAACCCCTGTCCTGTGGCTGCTCTGAAACTCCTCGGGGTGTCTTCTGTGAGCTGTGGCGATGCCCATACCGCAGTACTGGCTAAAGATGGGAGCGTTTACACGTTTGGCGATGGCACTTATGGCCAGCTGGGGCACAACTCCACAGCCAGAGAGCTCAGGCCCAGGAAGGTGGAGGCGATTCGAGAGAGAGCATCGCAAGTGCAGTGCGGCAGGAGCACCGAGGGTCAGACGGGCACCGGAAGTACTGCGAATCAGCTGCAGCCCAGCCCGGTGCTGCTGCCCGGGAGCTCTGAACGCGCTGACACTGCGGAGGAAGgtgatttcaactcCAGGCAGATAACGGTTTTCACTGGACACAATGCCAGTTTCATTCTAACGGGGCCTTCCAAGCACCCAACTGGCGCCGGAGGACTCCTGAAAATCGACACTCAGACTCTTCAGAAATGGCTGACTGTGGAATTTGGCAGTAAACAATGGAAAGAGGCTAAAAGGGATGTGTTTAGACAACTGCAGAAGAAACACTGGATTATTACCCAGTCTCCAGCCCCGAACGTGGAAGCCCTGGAGGTGTTCCTCATCCTGCCGGAGATCTCCGTGTTTCACGAGGAGAAGAACATCCCTGATCTCATTCTTCCCCTCTCCAGCGCCATCGCTAATCTGAGTGACGCGTCCTCCAAGATTCTCCGGACGTGGTGGACAATGCTGCCTGTGTCGCACATGAACAAAATCCTCCAAATGTTCAGACGGGTCATTTCCTGTAAGCTGAAGGGGTTAATAAAATCCATGAGAGACCATTTGCTTTTGAAAGATGTGCTGCAGAACATGAAGCTGCTGTTCAAGGCAAACAAACAGGTGAAGTTCCTTCTGCCAGTGAGCGCCTTCTACATGGACGAAGTCGTGCCCTTTGTTCCCATCGTGGTAGACATGCTCAGCTGGCGTTTCTATCAGCAGGAGGATCTGTCGACTGATGTTCACTCACCAGTTATTTTATGCCGGTTCCCCTTTGCTCTGAATCTACTCACCAAGGTTCAGATGCTGCATGTTGATGCCCAACTGAGAAACCTTGGACACATTGACTTCCACAACCCAGTGGTCATACAGAATTTAATTAGGCGGGCCCACAACCTCCCTCCCCTGCCGGTGTTCAGGCTGCAGGTGAGACGCACTCACCTCTCCGCAGACGCGCTGAGGAGGATCGACCTGGCAGAGGACAGAGACTTCAGGAAGCAGCTCATGTTCCCAGACAAACAGAACCAGGATCAAAGAGGCATTCAGAGGGAATTTTTCTGCAGGATCTGCAGCGAAATGCTTCAGCTCGAGTCGGGCATGTTCTGGCACAATGAATCCTCAACAGCGATCTGGTTCCCCACCAAGCCGTCGGTGGAGAAGAAGAGGTACTTCCTGTTTGGGATTCTCTGTGGCCTGGTTGTCTTCAACTACAACACGGTGCGCCTCCCCTTCCCTCTGGCCCTGTTTAAGAAGCTGGTGGATGATCTCCTGGACTACAGCGGTGAAGATGTAGAGGAAAGCCTGAGTCTCACCTTCTCGgtGAGCTGGGATGGCATGGAGGTGGATCTAGTGCCCGATGGCAAAAGCAAGCGGGTGAACAAATCCAACAGGAGGGAGTTTGTCAACGCCTGTGTGGACTATGTGTTCAACACGTCCGTGAGAGCCCTGTTCGAGGAGTTCAGACGGGGTTTTCTCAAAGTCTGCGATTTCGAGATCCTGAGTTTCTTCCAGCCTCAGGAGATCATGGAGGCGATGACGGGGACCACAGACTATGACTGGCACAAACTCAAGCAGAGCGCACTCTATGAGGGTGGGTACCATGCAGACCACCCTACCATTGTCACCTTCTGGAGGGTGTTTCTGGACCTGACAACGGCCCAGAAGAAGAGCTTCCTCGTGTTCCTCACAGGAAGTGACCGCATTCCCATCTTAGGGATCGATTGTTTAAAGATGACAGTCATGCCGTTGTCGTCTTCCACGGAGGAACACTTGCCGGAGGTGAACGTGTGcttcctgcagctgctgctcccTGGGTACAGCACCGAGGACACGATGAGACGCAAGCTTCTGCAGGCTCTCCCTCACAGCAGTGGCTCCTGGAAAACCTGAGCGGCGAGCAACGCCTGGCCTTCACAGTGTGCATCAAGGCTGACTCTTTGGTCCAGCTCATGTCGCACTTCCTGCAAAGtggttattttctatttctttgagagagtttttatttcagctatttttaaataagtatagCTCTTTGGCTCTTATGCAAATGTAAACGCTTTACCTTCAGGTCACCCAAGTTTGATTTTGTGACGGAAAGCAAGTTGTTCACACTGTCCTAATCACTGCAGTTTCATTTCAAAACCATTAGTGTTTGAAAACTGCTATTCATGCTTTGAATTCTGTTCAAGTCATCAGGgtacataaatgcatttttgcaaAGCTTTTCTGCAAGGTGGATGGGATTTCTCTTTAGGGGCTTTCCATCTAATctgaaatgtaatctgaaattgAAAGGGTTCTGCTACTTTTGATAACGGCTGGAAGTTCTAGAtctacactaccagtcaaaagtttttgCCAGTTTTTGTAGAAATGTACGCAGttcaatgtctcaatgtactctgaaattaaagcacagaacaattaaacaaatggaGAAATCATGGACTCTGATGTGAAAAAGTTGGGTTTTATACCCCCCTGCATTTatgccacccccacccccccatattctggaaccaggcagtctactgatcaaaacaagaccatccaggTTTTGGCAGAAgtaacacacacccgtagagagctcaacatgtccAGATGGAAAACTCCGTAACGATTTTCCATaactggatctgaacttctctgtgtttgatagaacatcaaataaataggctgaacaaaacaagcctatttccAAAGAAAccaatcgaaactgagtgatctgagATCTTCTGAAAGGCCCCCCCCCCTCAGTATATTgcgcgtttaccccccgggtatttaaaatactgaatatcAGTATGGCACACAGGAGAGCTAAAAATAGTTACCCATATCAACAGAACATGAGATTAATAGTAAATATGTTCTAGTAATGACCATACGATGGCGCTAAAACACAGCTGATGAATGCCTGACCCTGCAGAGACCCTTTTCACTCTTGGGAGCCACAGCCAGGACAGGTGACATGCGATCTGCGCTGTCGGCTTAATTTTTATTCATCTGAATAATTGGATCATTATAAAAGTCTGACGCTAGGTGGAAAAGtgtgaaaataacaaaaggaCAACATCTGTAAATATTAGGACTGAtccaaaagttattttttaaaacgaATAATTAGATTAATATGAATACGATGTTgccattttttctttcagaaatgtTACCTGGTGGGTCACCAGaacattgcattattaaaagctTATTGACAATATATTAGCTTTATCATTAACCTGTTTAGTCTGGGCATGAACTAGTTAA

Function

GO: NA

KEGG:

id description
ko04622 RIG-I-like receptor signaling pathway
ko05164 Influenza A
ko05162 Measles

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015921 True 4029 mRNA 0.50 22 29745428 29761435

Neighbor

gene id symbol gene type direction distance location
AMCG00015922 NA coding upstream 7696 29726374 ~ 29737732 (+)
AMCG00015919 NA coding upstream 65480 29665582 ~ 29679948 (+)
AMCG00015916 NA coding upstream 166593 29572501 ~ 29578835 (+)
AMCG00015917 NA coding upstream 194331 29549604 ~ 29551097 (+)
AMCG00015914 NA coding upstream 258846 29482269 ~ 29486582 (+)
AMCG00015928 NA coding downstream 317856 30079291 ~ 30082474 (+)
AMCG00015930 NA coding downstream 322574 30084009 ~ 30110354 (+)
AMCG00015929 NA coding downstream 374100 30135535 ~ 30154322 (+)
AMCG00015932 NA coding downstream 415815 30177250 ~ 30183373 (+)
AMCG00015931 LOC102778037,LOC105903813 coding downstream 422063 30183498 ~ 30188625 (+)
G101678 NA non-coding upstream 16713 29705977 ~ 29728715 (+)
G101638 NA non-coding upstream 149537 29578529 ~ 29595891 (+)
G101560 NA non-coding upstream 559101 29186105 ~ 29186327 (+)
G101558 NA non-coding upstream 562559 29182531 ~ 29182869 (+)
G101556 NA non-coding upstream 568104 29174777 ~ 29177324 (+)
G101848 NA non-coding downstream 833643 30595078 ~ 30641350 (+)
G101935 NA non-coding downstream 1511737 31273172 ~ 31316692 (+)
G101964 NA non-coding downstream 1912052 31673487 ~ 31674507 (+)
G101965 NA non-coding downstream 1917277 31678712 ~ 31679106 (+)
G101966 NA non-coding downstream 1921630 31683065 ~ 31683412 (+)
AMCG00015918 g3bp2,LOC106578160,LOC107714642,LOC106610282 other upstream 92490 29624045 ~ 29652938 (+)
AMCG00015901 NA other upstream 1164599 28577500 ~ 28580829 (+)
G101400 NA other upstream 1753414 27890552 ~ 27992014 (+)
G101275 NA other upstream 3367729 26373153 ~ 26377699 (+)
G101248 NA other upstream 3481120 26263915 ~ 26264308 (+)
G101752 NA other downstream 404593 30166028 ~ 30168289 (+)
G101870 NA other downstream 1042654 30804089 ~ 30809238 (+)
G101930 NA other downstream 1501026 31262461 ~ 31287766 (+)
AMCG00015959 NA other downstream 1972332 31733767 ~ 31746116 (+)
AMCG00015966 NA other downstream 2187040 31948475 ~ 31951870 (+)

Expression


Co-expression Network