Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00015937 |
| gene name | ldb2,LOC106611552,LOC107756465,LOC107680613 |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030132.1 |
| NCBI id | CM030132.1 |
| chromosome length | 32980562 |
| location | 30321510 ~ 30336269 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| symbol | description |
|---|---|
| ldb2 | Predicted to enable LIM domain binding activity. Predicted to be involved in several processes, including regulation of cell migration; regulation of kinase activity; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including epithelial structure maintenance; hair follicle development; and somatic stem cell population maintenance. Located in nucleolus; nucleoplasm; and plasma membrane. |
| description |
|---|
| PREDICTED: LIM domain-binding protein 2 isoform X8 |
| id | name | namespace |
|---|---|---|
| GO:2001141 | regulation of RNA biosynthetic process | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0003712 | transcription coregulator activity | molecular_function |
| GO:0030274 | LIM domain binding | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00015937 | True | 918 | mRNA | 0.61 | 6 | 30321510 | 30336269 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00015940 | LOC106611552 | coding | upstream | 12197 | 30297468 ~ 30309313 (+) |
| AMCG00015931 | LOC102778037,LOC105903813 | coding | upstream | 132885 | 30183498 ~ 30188625 (+) |
| AMCG00015932 | NA | coding | upstream | 138137 | 30177250 ~ 30183373 (+) |
| AMCG00015929 | NA | coding | upstream | 167188 | 30135535 ~ 30154322 (+) |
| AMCG00015930 | NA | coding | upstream | 211156 | 30084009 ~ 30110354 (+) |
| AMCG00015938 | NA | coding | downstream | 10164 | 30346433 ~ 30349433 (+) |
| AMCG00015941 | NA | coding | downstream | 30951 | 30367220 ~ 30390587 (+) |
| AMCG00015949 | NA | coding | downstream | 628447 | 30964716 ~ 30970883 (+) |
| AMCG00015953 | NA | coding | downstream | 868305 | 31204574 ~ 31216097 (+) |
| AMCG00015964 | LOC101068172 | coding | downstream | 1647700 | 31983969 ~ 31986525 (+) |
| G101678 | NA | non-coding | upstream | 592795 | 29705977 ~ 29728715 (+) |
| G101638 | NA | non-coding | upstream | 725619 | 29578529 ~ 29595891 (+) |
| G101560 | NA | non-coding | upstream | 1135183 | 29186105 ~ 29186327 (+) |
| G101558 | NA | non-coding | upstream | 1138641 | 29182531 ~ 29182869 (+) |
| G101556 | NA | non-coding | upstream | 1144186 | 29174777 ~ 29177324 (+) |
| G101848 | NA | non-coding | downstream | 258809 | 30595078 ~ 30641350 (+) |
| G101935 | NA | non-coding | downstream | 936903 | 31273172 ~ 31316692 (+) |
| G101964 | NA | non-coding | downstream | 1337218 | 31673487 ~ 31674507 (+) |
| G101965 | NA | non-coding | downstream | 1342443 | 31678712 ~ 31679106 (+) |
| G101966 | NA | non-coding | downstream | 1346796 | 31683065 ~ 31683412 (+) |
| G101752 | NA | other | upstream | 153221 | 30166028 ~ 30168289 (+) |
| AMCG00015918 | g3bp2,LOC106578160,LOC107714642,LOC106610282 | other | upstream | 668572 | 29624045 ~ 29652938 (+) |
| AMCG00015901 | NA | other | upstream | 1740681 | 28577500 ~ 28580829 (+) |
| G101400 | NA | other | upstream | 2329496 | 27890552 ~ 27992014 (+) |
| G101275 | NA | other | upstream | 3943811 | 26373153 ~ 26377699 (+) |
| G101870 | NA | other | downstream | 467820 | 30804089 ~ 30809238 (+) |
| G101930 | NA | other | downstream | 926192 | 31262461 ~ 31287766 (+) |
| AMCG00015959 | NA | other | downstream | 1397498 | 31733767 ~ 31746116 (+) |
| AMCG00015966 | NA | other | downstream | 1612206 | 31948475 ~ 31951870 (+) |
| AMCG00015967 | NA | other | downstream | 1657861 | 31994130 ~ 31996026 (+) |
