Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00015940 |
| gene name | LOC106611552 |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030132.1 |
| NCBI id | CM030132.1 |
| chromosome length | 32980562 |
| location | 30297468 ~ 30309313 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| description |
|---|
| PREDICTED: LIM domain-binding protein 2 isoform X8 |
| id | name | namespace |
|---|---|---|
| GO:0005634 | nucleus | cellular_component |
| GO:0003712 | transcription coregulator activity | molecular_function |
| GO:0030274 | LIM domain binding | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00015940 | True | 627 | mRNA | 0.59 | 4 | 30297468 | 30309313 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00015931 | LOC102778037,LOC105903813 | coding | upstream | 108843 | 30183498 ~ 30188625 (+) |
| AMCG00015932 | NA | coding | upstream | 114095 | 30177250 ~ 30183373 (+) |
| AMCG00015929 | NA | coding | upstream | 143146 | 30135535 ~ 30154322 (+) |
| AMCG00015930 | NA | coding | upstream | 187114 | 30084009 ~ 30110354 (+) |
| AMCG00015928 | NA | coding | upstream | 214994 | 30079291 ~ 30082474 (+) |
| AMCG00015937 | ldb2,LOC106611552,LOC107756465,LOC107680613 | coding | downstream | 12197 | 30321510 ~ 30336269 (+) |
| AMCG00015938 | NA | coding | downstream | 37120 | 30346433 ~ 30349433 (+) |
| AMCG00015941 | NA | coding | downstream | 57907 | 30367220 ~ 30390587 (+) |
| AMCG00015949 | NA | coding | downstream | 655403 | 30964716 ~ 30970883 (+) |
| AMCG00015953 | NA | coding | downstream | 895261 | 31204574 ~ 31216097 (+) |
| G101678 | NA | non-coding | upstream | 568753 | 29705977 ~ 29728715 (+) |
| G101638 | NA | non-coding | upstream | 701577 | 29578529 ~ 29595891 (+) |
| G101560 | NA | non-coding | upstream | 1111141 | 29186105 ~ 29186327 (+) |
| G101558 | NA | non-coding | upstream | 1114599 | 29182531 ~ 29182869 (+) |
| G101556 | NA | non-coding | upstream | 1120144 | 29174777 ~ 29177324 (+) |
| G101848 | NA | non-coding | downstream | 285765 | 30595078 ~ 30641350 (+) |
| G101935 | NA | non-coding | downstream | 963859 | 31273172 ~ 31316692 (+) |
| G101964 | NA | non-coding | downstream | 1364174 | 31673487 ~ 31674507 (+) |
| G101965 | NA | non-coding | downstream | 1369399 | 31678712 ~ 31679106 (+) |
| G101966 | NA | non-coding | downstream | 1373752 | 31683065 ~ 31683412 (+) |
| G101752 | NA | other | upstream | 129179 | 30166028 ~ 30168289 (+) |
| AMCG00015918 | g3bp2,LOC106578160,LOC107714642,LOC106610282 | other | upstream | 644530 | 29624045 ~ 29652938 (+) |
| AMCG00015901 | NA | other | upstream | 1716639 | 28577500 ~ 28580829 (+) |
| G101400 | NA | other | upstream | 2305454 | 27890552 ~ 27992014 (+) |
| G101275 | NA | other | upstream | 3919769 | 26373153 ~ 26377699 (+) |
| G101870 | NA | other | downstream | 494776 | 30804089 ~ 30809238 (+) |
| G101930 | NA | other | downstream | 953148 | 31262461 ~ 31287766 (+) |
| AMCG00015959 | NA | other | downstream | 1424454 | 31733767 ~ 31746116 (+) |
| AMCG00015966 | NA | other | downstream | 1639162 | 31948475 ~ 31951870 (+) |
| AMCG00015967 | NA | other | downstream | 1684817 | 31994130 ~ 31996026 (+) |
