AMCG00015941


Basic Information

Item Value
gene id AMCG00015941
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 30367220 ~ 30390587 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015941
TTTTTTTTTACCAAGTGCGGTCTTCTGCGCTGTGGCGGCatcgcaaacacacacacacacacacacatgcataccaGCGGCGTTTTATTCGGTGAAGAGGTAGCCTGTTTCATCATTTAACTGTAGTTACCCGGGCTTATAAACCTATTCACTGttactagtagtagtaagaGGTGGGCGCAACAAAAGCACAACCACATCACCCTCTTTACCGCAAAGGAAATTTGTGTCTCCTGGGACTGTCCCACTCACTGGGTCCAGCGGAGGCGGAGGTCGGGGGGACGGGGTTATGAAGGCTCTTCGCCCCAGGACCCCAGGTTGTGTGTTTGCGGCTTGAGGGCGGATGGACAGCATGCTCTGGACCCGGCTCTTTGTGCTGCGGCTTGCCTGCTCCGCTCTGGCCGGGCTGCAGGGCTCCCTCGGCGGCGGCGGCGCCTCCTCCTTCACCGACTGCATCCAGAGCCGGGGCCGGTCCGGCTACTACCAGGGCTGGATCGATGTCACCGAGTCCGGGGGGAAGTGCCTGAACTGGACGGACATCGCCGGCTTTGTTGAGAGGCACCCCGGGAGAGGGCTGGGGGGACACAACTTGTGCAGAAACCCGGACGGCAGGATCCGACCCTGGTGTTACTTCAGGAACAGCCGAGGCAGGACAGACTGGGGCTACTGCGACTGCAAGCAAGGCTCGGTGCGGCTGCAGGGGGGCCGGTCCAAACTGGAGGGGACGGTTGAGGTCTACTTGAACGGGGTGTGGGGGACGGTCTGCAGTAACGGCTGGGAGGACGAGGATGCGGCCGTGGCGTGCCGACAGCTGGGATACGGGTACAAAGGCCAGGCCCGGCAGACGGCGCTGTCCCGGCTCAGTCTGGCGCCAACACACTGGCGCGCAGTGCACTGCCACGGCCACGAGACGGAGCTGCTGGAGTGCCAGAGGACTGCGTGGAACGGGGGGGTGTGTGCCAACCGGCAGGCCGCGGCGGTGGTATGCACCCCTCAGGAAGAGGCTGTGTTTGTTCCAGTGCGCCTGGCGGGGGGCAGCTCTGAGCATGAGGGCCGCGTGGAAGTGTATCACTCCGGGCAGTGGGGCACGGTGTGCGACGACCAGTGGGACGACTCCGATGCCGAGGTGGTGTGCCGGCAGCTGGGACTAGGGGGGGTGGCGAAGGCGTGGAGCCAGGCGTATTTCGGCGAGGGCTCGGGCCGGGTGTGGCTGGACGAGGTGCGCTGCACGGGCAACGAGCTCTCGCTGGAGCAGTGCGCCAAGAGCCTCTGGGGGGAGCACAACTGCGAGCATCGGGAGGACGCCGGGGTGTCCTGCACTCCTCTCACAGATGGCTCCATGCGCCTGGTGGGCGGACAAGGCAGCTACGAGGGCCGTCTGGAGGTCCACTACAAGGGCCTGTGGGGCACGGTCTGCGACGACGGCTGGACGGAGTCGAACACTCAAGTGGTCTGCAGACAGCTGGGATTTCGGTACAGTCCGGGAGCCACGCAGCCCCGCCCCACGCCCGGCTCGGGCCCGATCCACCTGGACGACGTGAGCTGCTCTGGGAAGGAGGCGTCACTCCCTCTGTGCGTCAGGAGGGAGTGGAGGAAGCACGACTGCACCCACCAGGAGGATGTGTCTGTGTCCTGCAGCCCGGAGCGCGTGGTCCACGGACTCCCCCCCAGCCTGCCCATCCGGCTGATGGATGGGGAGAACAAGAAGGAGGGACGGGTGGAGGTGTATATCAGTGGCCAGTGGGGGACGATTTGTGACGACGGATGGACGGACCGGGACGCCGAGGTGGTCTGCAGGCAGCTCGGCCACGCGGGCTCAGCTAAGGCTAGGACAATGGCCTACTTCGGGGAAGGGCAAGGTCCCATCCACGTGGATAACTTGAAGTGCACGGGCAATGAGAGAGCGCTGGCCGACTGCATCAAGCAGCCGGTGGGGACGCACAACTGCCGGCACAGCGAGGACGCCGGCGTCATCTGCGACTACGGGGAGCGCACGACTGCGAGGAACATGAAGGGAGACCCGATCGCGTCTGTGTGTGGGCTGCGCTTAGTACACACCCGCCAGAAGAGGATAATCGGGGGGGAGAATTCCTTAAGGTACGGCAACGACACCAAGACGTACAAGGTGCGGGTGGGCGACTACCACACGCTGGTCCCGGAGGAGTACGAGGCCGAGTACGGGGTCGACGCCATCGTCCCGCACGGCAACTACAGGCCAGACAGCAACGACTACGACCTGGCGTTGGTGCGGCtggcggggcggggggggcagtGCGTGTCCTTCGGCCGCCACGTCCTGCCCGCCTGCCTGCCCCAGCGCCGGGAGAAGGTCCTGAAGGTGGCGTCCAACTGCTTCATCACAGGCTGGGGGGACACGGGAAGGGAGGCGCCCGTCTCCCTGCTCCACCGGAGGCACTGCGAGGAGAGCTACTCGGAGCAGTTCACCGGGAGGATGCTGTGCGCCGGCAGCGCCCCGGCGGGGAGGTGGGTGGACAGCTGCCGCGGCGACAGCGGGGGCCCCCTGGTGTGCGAGAGGCCGGGTGGCGGGTGGGTGCTGTACGGGGTCACGTCGTGGGGACACGCATGCCGCCTGCGGAACTCACCGGGCGTCTACACGAAAGTGTCGGCCTTCCTGCCCTGGATCAAGCGAGTGACCGAGCTCTGA

Function

GO:

id name namespace
GO:0008236 serine-type peptidase activity molecular_function

KEGG:

id description
K09624 PRSS12; neurotrypsin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015941 True 2665 mRNA 0.65 13 30367220 30390587

Neighbor

gene id symbol gene type direction distance location
AMCG00015938 NA coding upstream 17787 30346433 ~ 30349433 (+)
AMCG00015937 ldb2,LOC106611552,LOC107756465,LOC107680613 coding upstream 30951 30321510 ~ 30336269 (+)
AMCG00015940 LOC106611552 coding upstream 57907 30297468 ~ 30309313 (+)
AMCG00015931 LOC102778037,LOC105903813 coding upstream 178595 30183498 ~ 30188625 (+)
AMCG00015932 NA coding upstream 183847 30177250 ~ 30183373 (+)
AMCG00015949 NA coding downstream 574129 30964716 ~ 30970883 (+)
AMCG00015953 NA coding downstream 813987 31204574 ~ 31216097 (+)
AMCG00015964 LOC101068172 coding downstream 1593382 31983969 ~ 31986525 (+)
AMCG00015968 NA coding downstream 1683666 32074253 ~ 32075287 (+)
AMCG00015969 NA coding downstream 1687971 32078558 ~ 32080626 (+)
G101678 NA non-coding upstream 638505 29705977 ~ 29728715 (+)
G101638 NA non-coding upstream 771329 29578529 ~ 29595891 (+)
G101560 NA non-coding upstream 1180893 29186105 ~ 29186327 (+)
G101558 NA non-coding upstream 1184351 29182531 ~ 29182869 (+)
G101556 NA non-coding upstream 1189896 29174777 ~ 29177324 (+)
G101848 NA non-coding downstream 204491 30595078 ~ 30641350 (+)
G101935 NA non-coding downstream 882585 31273172 ~ 31316692 (+)
G101964 NA non-coding downstream 1282900 31673487 ~ 31674507 (+)
G101965 NA non-coding downstream 1288125 31678712 ~ 31679106 (+)
G101966 NA non-coding downstream 1292478 31683065 ~ 31683412 (+)
G101752 NA other upstream 198931 30166028 ~ 30168289 (+)
AMCG00015918 g3bp2,LOC106578160,LOC107714642,LOC106610282 other upstream 714282 29624045 ~ 29652938 (+)
AMCG00015901 NA other upstream 1786391 28577500 ~ 28580829 (+)
G101400 NA other upstream 2375206 27890552 ~ 27992014 (+)
G101275 NA other upstream 3989521 26373153 ~ 26377699 (+)
G101870 NA other downstream 413502 30804089 ~ 30809238 (+)
G101930 NA other downstream 871874 31262461 ~ 31287766 (+)
AMCG00015959 NA other downstream 1343180 31733767 ~ 31746116 (+)
AMCG00015966 NA other downstream 1557888 31948475 ~ 31951870 (+)
AMCG00015967 NA other downstream 1603543 31994130 ~ 31996026 (+)

Expression


Co-expression Network