AMCG00015949


Basic Information

Item Value
gene id AMCG00015949
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 30964716 ~ 30970883 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015949
GACAGTGTGCAGCGACCTGGAGCTCCGGGAAGTGGTCAGCAGACTGAAAGACTGGTTCAAGGTGCTGCACGAGAACGGAAACCAGAACAAAAAGATGAAGATACAGAGGCCAGAGAGAAGCCGGTTTGATACGAGTATTCTGCCGATTTGCAAGGACTCTCTGGGCTGGATGTTTAACAGGCTAGACACGAACTATGACCTCCTGCTGGACCAGTCGGAGCTGTCCAGCCTGTATCTGGACAAGAACGAGCTGTGCACCAAGTCGTTCTTCAACTCCTGCGACACCTACAGAGACGGCTTGATCTCCAATAACGAATGGTGCTCCTGCTTTCAGAGACAACAAGACCCTCCCTGCCAGACAGAACTGACCAATATCCAGAGCCAGCAAGCGGGAAAGAAACTCCTGGGGTTATATATACCGTCCTGTGACGAGGACGGATATTACAAACCCACGCAGTGTCACGGCAGCAGCGGCCAGTGTTGGTGTGTCGACAGATACGGGAACGAAGTCGTGGGATCCAGGATGCACGGGGCTTCGGACTGTGGTGTGGAGCTGGAGTCTTCCGGCGACTTCGGCAGCGGCTATTTCCAAGTGTCGGACGACGAGGACGGGGTGGAGGGAGTCCTCATTGACGAGGACGAGATCGACGACGATGACGAGGACGAGGgtgacgacgacgacgacgaggGATACATCTCGTAGTCGCCGCGCTCTCACAAACTCCTCTCCGTCTCAGATTGCACGTTTTCTAAGGTGACAACCCATGCAGATTACTTCCTGTACCATACTAACAACCCACGGATTCAACTCAGcgtgtatattttgtataatgtaacCTCAGATATATCCACTGAATACAtgggagtttttatttttgatttcttagTCCTACCCCTGAACCCCACCCTCCCCCATTTCTTTAGGAAATGATCAATCTTTACATGTAGTTGTGTGTTAGGAGTTGCTTCAACAGACAATTCAAACAACCAAATGAAGACGACACCTTTGACATGGAAATCAGAGGAAACAAAcagtaacaaacacacacatacagcgaacaacaaacaaacagtgacGACAGTAGCTCTATCGGCAGCCTTGACTAACCCCGTCGTGACGCAGTGACGCAGTGATGCAGTGCTTTGTGTTGACTAGAGTCGCCCACTGACGCATACACTTAGGAGACGGCTCTATAGGAGGAAGGGTCATCTCTTTCCTGCACTAATCTCAGCATCTTAAAGAGGACTTTCGAGTACTTCTCGacattttctgaacattttcgACACTCTTCTCCCTATTCCAGCAGTCCAGCCCTCTCCAGAGCGCTGCAATTAGTGGTAATCATCCATAGCATGATAGAAGTCACTCCATCATATACGATGCAGTTTTTATTCATTGCATTGATGacgatttctttcttttcttcctgtCCTTGTTGTCCGCACAACGTACATGGGGACTGTCTGTACCGTAGTAAAGATTTTTCTATAGaaattatacacaaaaacatatatacaaaaaaaagataacatttcTAAGAAGTATCTAGACAAAGCAAGGTTTTatgtgtttaaattgaaaagtGTGTCCGAGTTGCAAGcagtctttttttctctcagatTTATATTTGCAACAGTGTTCGACCTTTTCAGtcagtttattattgttgttattatttggaAAGCATAATGTTGTCCCTCGCCAACAATTGCGTAGAATGTACTGTTATTAAACATGTAATCGTAATAATAGTAGAGGGGGGACATCGGTGTCCCTGTCCTAAGCGAGAGGACACTACGGATTCCTCCCTTATAAAGGACAGAAGATGTGTGTGCCATGGTGTACGATACATCTTAAACAAACTGCCGCTTCCTGTCCGATTGATCAGTCAAGtgcgaatatatatatacacacacatgtatgatGCTGACAGGTTCCCACCCTTAATATTGACTCTTAACACCCTCAGAAAGATCATTATGCCCAACCTAAACATGGACTCTGAGTAAAGATCTTTTTAATCATTAGTGTTGAGGGATATAAATGTGACAACAGTTTAATTTGACCCGTGATAGGTgctaaaacacacagacacagctctgCGCACCTCTAAATATTCAGCACCTTTTCACCTTTTCAAGAAAAAGAGTCTCAGACCCATTGTTGTCGGCCGTGCCTCAGGGATGGAGGCGTGGCGGGACGCTCTGTCGCCGCGCTCTCGGACAACACCGCCCCGATTATTCTGTCGGTTAGACACAGCTGACATTATGTTACTTCAAGATCTTGTCCAGTTCATGGCTGACCAGATGTAACCGCCTATAGCATCGTCCTCGGTCCATGACTGGGAGCCGGTGGGTCGGAGCAAAGGCTTGTGTGAGACCCCTGCTTTGTAAGAGTAGAGTTTAGACCGTAGAAAAGCACAGACATTgtgttttcagctttttttaaaggtatttacTGCTGCtggaatttttgttttgttttgtttgttttcttctgtcgTTTTGTTCATAAAACACATGGTCTGTGTCATACGATTCTCATGTAGCATAACGACTGATGATGTACCTGTAGAGGACATTATTTTAATCGCAGTTATTTGACATTTGACCAGCATGTTGACAGACGTGTGAGCGTGGGATTCCCGTGACAGGCCCCTGCGGCCCTCGTGTGCTGTGAACGAGTCCGCTTGTGTTCAGTCATTTGCACAATTGGCTTCAACATCAAATGAATCTTGATCTGGATTGTTTTTTctctatattttttctttttgcatttaaaaaaatgataatcattatctttttcagtttaaatattgtttaaaaaaatgcattttttacaatgtatgtataatttgcagaaataaaaattatgTTAGCCAA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015949 True 2883 mRNA 0.44 5 30964716 30970883

Neighbor

gene id symbol gene type direction distance location
AMCG00015941 NA coding upstream 574129 30367220 ~ 30390587 (+)
AMCG00015938 NA coding upstream 615283 30346433 ~ 30349433 (+)
AMCG00015937 ldb2,LOC106611552,LOC107756465,LOC107680613 coding upstream 628447 30321510 ~ 30336269 (+)
AMCG00015940 LOC106611552 coding upstream 655403 30297468 ~ 30309313 (+)
AMCG00015931 LOC102778037,LOC105903813 coding upstream 776091 30183498 ~ 30188625 (+)
AMCG00015953 NA coding downstream 233691 31204574 ~ 31216097 (+)
AMCG00015964 LOC101068172 coding downstream 1013086 31983969 ~ 31986525 (+)
AMCG00015968 NA coding downstream 1103370 32074253 ~ 32075287 (+)
AMCG00015969 NA coding downstream 1107675 32078558 ~ 32080626 (+)
AMCG00015978 NA coding downstream 1312556 32283439 ~ 32289880 (+)
G101848 NA non-coding upstream 323366 30595078 ~ 30641350 (+)
G101678 NA non-coding upstream 1236001 29705977 ~ 29728715 (+)
G101638 NA non-coding upstream 1368825 29578529 ~ 29595891 (+)
G101560 NA non-coding upstream 1778389 29186105 ~ 29186327 (+)
G101558 NA non-coding upstream 1781847 29182531 ~ 29182869 (+)
G101935 NA non-coding downstream 302289 31273172 ~ 31316692 (+)
G101964 NA non-coding downstream 702604 31673487 ~ 31674507 (+)
G101965 NA non-coding downstream 707829 31678712 ~ 31679106 (+)
G101966 NA non-coding downstream 712182 31683065 ~ 31683412 (+)
G101969 NA non-coding downstream 735923 31706806 ~ 31707293 (+)
G101870 NA other upstream 155478 30804089 ~ 30809238 (+)
G101752 NA other upstream 796427 30166028 ~ 30168289 (+)
AMCG00015918 g3bp2,LOC106578160,LOC107714642,LOC106610282 other upstream 1311778 29624045 ~ 29652938 (+)
AMCG00015901 NA other upstream 2383887 28577500 ~ 28580829 (+)
G101400 NA other upstream 2972702 27890552 ~ 27992014 (+)
G101930 NA other downstream 291578 31262461 ~ 31287766 (+)
AMCG00015959 NA other downstream 762884 31733767 ~ 31746116 (+)
AMCG00015966 NA other downstream 977592 31948475 ~ 31951870 (+)
AMCG00015967 NA other downstream 1023247 31994130 ~ 31996026 (+)
G102064 gria2 other downstream 1193313 32164196 ~ 32171075 (+)

Expression


Co-expression Network