AMCG00015993


Basic Information

Item Value
gene id AMCG00015993
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 32587833 ~ 32590211 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015993
ATGGGGTCACTCGCTGCGGCTCTGCTGCTCCTGGCCCAGTGCCTCCTCGGTCCCCCCAGCGTGAGCGGCAGGCCGACGTGTCAGCGATGTGACGAGCACAAGGTGTGCGACTGCTCTGAGCAGAAACTCCTGCAGATGCCTGCCCTTCCCATAGCGGACGTGCTGGGCCTCAATGTTTCCTACAACTACATTGAAGCGATCTCAGAATTGGACTGCAGGTCTTTCTTGCAGCTCAGAGCGCTGAGCTTGCAGGGCAACAGGATTCACTCCATCCATGAGCGAGCTTTCACAAGCCTCGCGAACCTGCAGAGCCTGGACTTGTCCTACAACCAGCTGAGCGATTTGTCTCCGTCTTGGTTCTTCGAGCTTTCGTTACTGCAGCACCTCAACCTGCTGGGCAACACCTACCAAACTCTGGGGCAGGGTCTGCTCTTCCTGCCCCTGGCGAGCTTGAGAAGCCTGCAGTTTGGAGGCCCGGCGTTCCAGGCCGTGGGTGGCCATGACTTCGATGGGATCCAGCAGCTGGGTGATCTGGTGATGGATGGCAATGAGTTGCTTCGGTATGAAGAAGGCAGCTTTGGCTACCTACGGAGCCTGGACTCTGCCACGGTGAGTCTGCGTGGCCCGTTTGTGCGGGACCACAATCTCACATCCTGCGTTCTCCGGGATCTGTCCAGCAGCAAGACACACCTGACCCTCACCGACTTGAAACTGACTGACGCAGAGTCCATGCGGCCGCTTGGGGAATTTGGACGGAGAGGCGGGGAGATGCTGACATTTAGGAACGTGTCCATGACAGACGAGGCCGTGGTGACCTTTATCTTGCTCCTGGGGACATCAAGGCTGACCTACCTGGGGGTGGAAGACTCCCAGCTTGCAGGACACGGCCAGTGGAGTAAAGCCAAGCTGGTTCAGCCCAAGTATCTGCACACTCTTTTCATCAGAAATATACAGATCCTGGATTTCTATGCCTTCAGTTCTCTGACTTATTTCCAGAACCTTCTGAATGCCACCACAAGAGTGACCATCATCAACAGCAAAGTCTTCCTCATCCCCTGCAACACGTCTCGCAATTTTCGACATGTGGAGTTTCTGGACCTCAGTGACAACCTGCTCACTGACAGTGCCATGAAGGAGTCGGCCTGCCACGGAGATGGGGTGTGGAGAGAGCTTCAGGTCCTGAACTTGACCAAGAACTCGCTGAGGTCTATCGGCCCATTAAGCCAGCTGTTCACCAGACTGGTCAAGCTCACCTGCCTGCAGCTCAgtctcaatttattttctgagatGCCTCGGGAATGTCACTGGCCTCCTAACCTCCAAACCTTAAACCTGTCCTCCTGTCAGATACGCACATTAACGCCTTGCGTCCCAAAGAGCTTGCATGTCCTGGATCTGAGCAACAACGCTCTGTCCGTCTTCTCCGTCACACTGCCTCTCCTGACCGAGCTCCGCCTCTCGGGCAACAAGTTCGTCACCCTGCCTGAGGCGCGGCTGCTGCCCAGCCTGGCAATGCTGTCCCTGAGGGGCAACAAGCTCATCCGGCTGACCAAGAGCGGGCTCCAGGCCCACCGCAAGCTGACCACCCTGGAGGCTGGTGACAATAACTATGTGTGCTCCTGCGAGTTTGTGGCGTTCGTGCAGCAGGACCTCCTCCACATGGTCAGGCTGCCCGACTGGCCTCAGAGTTACATGTGCGACTCCCCCACGGCTCTGAGAGGAGTCCTGGTCCGAGACGCCCGGCACTCGGTCTTCGAGTGTCACATGACCGCGGTCGTGGCGGTGCTCTGCACAGGCGTGACCTTGACGTTCCTGGTTGTGGGGACCCTGTGCTACAAGCTGCACGCCGTGTGGTACCTCAGAATGAGCTGGGCCTGGATCCGGGCCAAGAGGAAGCCCGCTGCGCCCCAGAGCAGTGAGCTGTGCTACGATGCCTTCGTGTCCTACAGCGAGAGGGACTCCGAGTGGGTGGAGAACTACCTGGTGGCGGAGCTGGAGAGTGTCCTGCCTCCCTTCAAGCTCTGCCTGCACAAGCGAGACTTCCTCCCTGGGAAGTGGATCATGGACAACATCATCAACTCCATCGAGCAGAGCCGCAAGACGCTGTTCGTGCTGTCACGCCACTTTGTCAGCAGCGAGTGGTGCAAGTACGAGCTGGACTTCTCCCACTTCCGGCTCTTTGACGAGAGCACCGACACAGCCGTGCTCATCCTGCTGGAGCCCATTCCCAAGGAGACCATCCCCAAGAGGTTCTGCAAGCTGCGTCAGGTCATGAACTCCCGGACCTACCTGGAGTGGCCAGAGGACGAGGAGCTCAGGCCCATCTTCTGGTACAACCTCAAACTGGCCATTAAGAACCAGGACTGCACAGCAGACTAA

Function

GO:

id name namespace
GO:0002224 toll-like receptor signaling pathway biological_process

KEGG:

id description
K10159 TLR2, CD282; toll-like receptor 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015993 True 2379 mRNA 0.58 1 32587833 32590211

Neighbor

gene id symbol gene type direction distance location
AMCG00015988 NA coding upstream 10610 32576870 ~ 32577223 (+)
AMCG00015986 NA coding upstream 95313 32476372 ~ 32492520 (+)
AMCG00015982 NA coding upstream 112578 32470381 ~ 32475255 (+)
AMCG00015980 gucy1a3 coding upstream 134544 32449256 ~ 32453289 (+)
AMCG00015977 NA coding upstream 273333 32303980 ~ 32314500 (+)
AMCG00015992 NA coding downstream 88912 32679123 ~ 32682135 (+)
AMCG00015995 NA coding downstream 107846 32698057 ~ 32702009 (+)
AMCG00015994 NA coding downstream 138997 32729208 ~ 32746535 (+)
AMCG00015996 NA coding downstream 162572 32752783 ~ 32755820 (+)
G102043 NA non-coding upstream 520381 32065836 ~ 32067452 (+)
G101997 NA non-coding upstream 759259 31828190 ~ 31828574 (+)
G101979 NA non-coding upstream 852879 31734174 ~ 31734954 (+)
G101970 NA non-coding upstream 870512 31716454 ~ 31717321 (+)
G101969 NA non-coding upstream 880540 31706806 ~ 31707293 (+)
G102193 fgg,LOC106602564 non-coding downstream 128879 32719090 ~ 32723878 (+)
G102202 NA non-coding downstream 192505 32782716 ~ 32791133 (+)
G102203 NA non-coding downstream 205847 32796058 ~ 32796335 (+)
G102204 NA non-coding downstream 207123 32797334 ~ 32798557 (+)
G102219 NA non-coding downstream 252979 32843190 ~ 32843498 (+)
AMCG00015981 NA other upstream 190423 32382249 ~ 32397410 (+)
G102064 gria2 other upstream 416758 32164196 ~ 32171075 (+)
AMCG00015967 NA other upstream 591807 31994130 ~ 31996026 (+)
AMCG00015966 NA other upstream 635963 31948475 ~ 31951870 (+)
AMCG00015959 NA other upstream 841717 31733767 ~ 31746116 (+)
G102201 NA other downstream 189902 32780113 ~ 32781716 (+)
G102286 NA other downstream 317288 32907499 ~ 32909553 (+)

Expression


Co-expression Network