G96010


Basic Information

Item Value
gene id G96010
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 3903697 ~ 4039218 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU119735
ccctccttctctctctctttctctgctcaGCTTTACAGTGCAGGGAAGTTGCAGGGCAACTGCGGCAGATCGATGTCAGCGCGGGGCAGGTTTTTGGCACCAATACAGCTGACGCCATCTTCACCCTGTACGGGGGGACCTGGACTCAGCTGCCCGGGGCACTCAAGCATGTCACGGTCGGGCCCTCGGGCGTCTGGGGCGTTAACAGTGCCAACGCCATCTTTAAGCTGGTGAATGCCAACTGGGTACAGGTGCcagGTCAGCTGAAGCAGATTGATGCTGGTGGTGTCCAGTTCGTGGCCGGGGTCAACACTGCAGACAACATCTTCTGTCTTGGACAGGATGCCACAGTGGGGTACAAGGGCCCTGGCTCCCCCACCCCCTGGCAAGGCATCCCGGGGGCTCTCAAGTACTACAGCTGTGGGCCCCTGGGTTGCTGGGGGGTGAATGCCGCCGAAGACATTTTCGTGAGGAAGGGGGTGTCTCCACAGCAGTGCCAGGGGACAGGGGATTGGCAGCAGGTGGACGGGAAACTGTCCATGATAGAGGTGGGCAGCGAAGGCAGTGTGTATGGGGTCAATGCTGCCGGGGACATTTTCTACAGGAATGGGATCACTAGCACTAACCCTGCAGGCACTGGCTGGACCCCACTAATCATGTGTGCGAAGAGCAAGCACGTGTCCTTTGACCTGGGTCATCTGTGGGTCATCACCCAAGATAACCGGATCTTGGACTGCAGCTGAGCGCTCACAGCCAGCAGAGACCTCACAactttctttgtgtttgcaataaatatgaatctttaaagatatttttaaaagtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataca
>TU119736
ccctccttctctctctctttctctgctcaGCTTTACAGTGCAGGGAAGTTGCAGGGCAACTGCGGCAGATCGATGTCAGCGCGGGGCAGGTTTTTGGCACCAATACAGCTGACGCCATCTTCACCCTGTACGGGGGGACCTGGACTCAGCTGCCCGGGGCACTCAAGCATGTCACGGTCGGGCCCTCGGGCGTCTGGGGCGTTAACAGTGCCAACGCCATCTTTAAGCTGGTGAATGCCAACTGGGTACAGGTGCcagGTCAGCTGAAGCAGATTGATGCTGGTGGTGTCCAGTTCGTGGCCGGGGTCAACACTGCAGACAACATCTTCTGTCTTGGACAGGATGCCACAGTGGGGTACAAGGGCCCTGGCTCCCCCACCCCCTGGCAAGGCATCCCGGGGGCTCTCAAGTACTACAGCTGTGGGCCCCTGGGTTGCTGGGGGGTGAATGCCGCCGAAGACATTTTCGTGAGGAAGGGGGTGTCTCCACAGCAGTGCCAGGGGACAGGGGATTGGCAGCAGGTGGACGGGAAACTGTCCATGATAGAGGTGGGCAGTGAGGGCAGTGTCTACGGGGTCAATGCTGCCGGGGACATTTTCTACAGG

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU119735 True 887 lncRNA 0.52 4 3967029 4039218
TU119736 False 605 lncRNA 0.60 3 3903697 4039218

Neighbor

gene id symbol gene type direction distance location
AMCG00015169 NA coding downstream 78660 3815946 ~ 3825037 (-)
AMCG00015163 megf8,LOC104957441,LOC106633547,LOC102782412,LOC106605571 coding downstream 438886 3416852 ~ 3464811 (-)
AMCG00015161 NA coding downstream 489495 3408589 ~ 3414202 (-)
AMCG00015159 NA coding downstream 496156 3403474 ~ 3407541 (-)
AMCG00015160 NA coding downstream 505545 3394887 ~ 3398152 (-)
AMCG00015181 NA coding upstream 92184 4131402 ~ 4163989 (-)
AMCG00015179 NA coding upstream 128143 4167361 ~ 4169016 (-)
AMCG00015177 NA coding upstream 142734 4181952 ~ 4184519 (-)
AMCG00015188 LOC104961374 coding upstream 167057 4206275 ~ 4209529 (-)
AMCG00015186 NA coding upstream 217049 4256267 ~ 4257343 (-)
G95978 NA non-coding downstream 32363 3871076 ~ 3871334 (-)
G95968 NA non-coding downstream 173378 3729999 ~ 3730319 (-)
G95957 LOC100846954 non-coding downstream 285399 3617773 ~ 3618298 (-)
G95960 NA non-coding downstream 300020 3602604 ~ 3603677 (-)
G95933 NA non-coding downstream 430771 3472207 ~ 3472926 (-)
G96110 ctrl,LOC103045314,LOC108277669,LOC108441368,LOC107745200,LOC102296088 non-coding upstream 176509 4215727 ~ 4216894 (-)
G96115 NA non-coding upstream 212664 4251882 ~ 4255484 (-)
G96125 NA non-coding upstream 262414 4301632 ~ 4301940 (-)
G96127 NA non-coding upstream 275475 4314693 ~ 4314916 (-)
G96128 NA non-coding upstream 276979 4316197 ~ 4316936 (-)
AMCG00015164 NA other downstream 296505 3603683 ~ 3607192 (-)
G95921 NA other downstream 553255 3349879 ~ 3350442 (-)
G95854 NA other downstream 706508 3196421 ~ 3197189 (-)
G95850 lipe other downstream 714604 3186169 ~ 3189093 (-)
G95791 NA other downstream 923289 2978197 ~ 2980408 (-)
AMCG00015180 NA other upstream 71101 4110319 ~ 4123963 (-)
G96094 NA other upstream 135661 4174879 ~ 4180441 (-)
G96191 NA other upstream 578493 4617711 ~ 4619264 (-)
AMCG00015203 NA other upstream 739175 4778393 ~ 4802904 (-)
AMCG00015210 NA other upstream 928832 4968050 ~ 4976350 (-)

Expression


Co-expression Network