G96300


Basic Information

Item Value
gene id G96300
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 4894754 ~ 4911505 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU120071
AGGCATCGGGGCAGATGCAGCAGAGTACTCTTTCAGATAAAAGAGAACCgGTGGGAGTCTGATGTCTCCAGGAAGGGGGTCGATCAAAAGCGACGTCACTGATGCAGGGTGGTATCCAAACGTCCTGAAACTAAAGATTTAAGACCGAAGAAACGCAAGACTCATAAACTTCCGGCTCTGCTACTTGTTACAGGGgCAGGTGTTGGAACTGACAGACGAAATGGTCAACCAAATGATCTTGTTATTTCTTGCCCTACTCCCTTGTGTGGCAGAAACTGCTCAGGCACAAGGACACACAGATTGTGGCAATTGTTATAAGATTGAACCAGGCGCCATGGTGGGCATCATCATCGGGGACGTGATCCTGACTGTGTTAATCGTCATCTCTGTCTATTACTGCGCCAGCCGCAAGAGACAGAAGAGAGAACAAGCTGATAAAGTCTACATGAACGTCAGAGCGAACGTCAAAGCCTGAAGCCCGAAATGCTTTCCTGCAGTGTGCGCCTGCCTCTCCTGCACTCTGTCCGTCTCTCCACACCAGCCTCCTGGAGCCAGATCCAGGGCCGAGGCCACCAGCCGACTACTACTATCAACTGCTTCTGAAGAGAAAATCGTGAAGATTGTTAATGGAAGGATGACTGCAAATCTGTCAGATCTCTGCCCTTCCCTTTTACCACATCACCCTGTCAAATGATCAGTCAATTGGTATCTTGGTTAGAATGTCTATAGATCTGGAATAGGACACCTTGACACTTCCATTCCCTTCCAACCACCCCCCTTGCCCTTCCCCTACAAATAAGAACAATTCTCTTACACTTTATTCCATCCTGGAACTGCCACTGGACACACATATCAGCCCAACAGAGAGTTGAAAACAACCCATTAGCATGCAACAGCAAGCTTCCTCTGAAATGTACTTCCTGTTTAAAGAATGAAGATGTCCAAGGAGTTCAAAGCTACAGGGTCAGGGCTGCAACCCCAGAATCCTGGTCGCAGAGGGCTAAGGAAATGACCTGCCATGTCTGCGCCCTCAGAGCAAAAACTTTTACTGCGTTTCCCTCTTTATTAAAGAAGAGATCGATCCTCTGCAGCCTGAGTGAAGGAACTAAAGTCTGATGGGTCAGTGAGGCGAATCCTGAGCTATGGTGTCAAACTCCAGTCCTGGTTTCCCTCCAGGAGCAGTAGCTCTCTAAATTACTCTGATGGAATGATTTGCTGTTATTTAAGGCTCTTCAAAGCTTTTTTCTCTCGAATCGCAAGcctgtatgtactgtactgtactgtactatgcTATGCTGTGCCTTTGCTATGCTTTTGTATTATGTACACCTTTCATCAGGAGAACACAAAAGGGCAATTGGAAAAGAATGGCATGTGTCTGAATTATGTGTTctcttattatatttgtaaagggCTTTGTACAATGAATGTGTTCATATCTATAGTTTTGGCTCTGAGACATATTGCTTGCTGCAATAATTTTGATAGACTGATGGAAGAATACTGTGTCTTGCTGATTCCTGAACCTCTTCTTGATTTTACCATTCCAGTTCCTCTCAGAGATGTTCTATCTGCTGCATTGAGGTTAGAACTCTGGAATATTTTCTTTAGTATATAATGCACTATAACATGCTAtgctatattatactatataccATTGTCTCTATGTATACGTAAGAGCTattatatattcagtatatatatttatttattatcagcaCACTTGCCCCTTACAGGaactttgtattaaaaataacaaaactggcATTCAAAACCATTCTGAtcacctgtttttttgttgatcAGTTAGTTGGTTGTCCCTCAGTCCTCTTATCTTCTCAATCAGTGTCTGGAGCTTAAGTGAAAAAGTTTGGCACACCCTCCCCCCAATTATAAACTTTTGAACAACTGGAATCAGTGACAATCCTACTTTATGAAGATTTGTAATGCTAGTAGGAATTAAtcctttattaaatattttctcttcCTCATGTTTGCCATTTCCtgaattctgaaattaaaaaaaaaacggacaATGAGTTTTCATTAGGAGCAAGTAACCTGCAGAACTAATAAAATTGTGCTAAGTAGGTATTATTAAGCTGTTAGGCTATGTGTTCTGTGTGTATTAACTTGAAGATTTGGATGCtacgaaaataaaatatgattttgaaaatcTGCA
>TU120072
AGGCATCGGGGCAGATGCAGCAGAGTACTCTTTCAGATAAAAGAGAACCgGTGGGAGTCTGATGTCTCCAGGAAGGGGGTCGATCAAAAGCGACGTCACTGATGCAGGGTGGTATCCAAACGTCCTGAAACTAAAGATTTAAGACCGAAGAAACGCAAGACTCATAAACTTCCGGCTCTGCTACTTGTTACAGGGGTAAGGAAATTTGACTCCCATgCAGGTGTTGGAACTGACAGACGAAATGGTCAACCAAATGATCTTGTTATTTCTTGCCCTACTCCCTTGTGTGGCAGAAACTGCTCAGGCACAAGGACACACAGATTGTGGCAATTGTTATAAGATTGAACCAGGCGCCATGGTGGGCATCATCATCGGGGACGTGATCCTGACTGTGTTAATCGTCATCTCTGTCTATTACTGCGCCAGCCGCAAGAGACAGAAGAGAGAACAAGCTGATAAAGTCTACATGAACGTCAGAGCGAACGTCAAAGCCTGAAGCCCGAAATGCTTTCCTGCAGTGTGCGCCTGCCTCTCCTGCACTCTGTCCGTCTCTCCACACCAGCCTCCTGGAGCCAGATCCAGGGCCGAGGCCACCAGCCGACTACTACTATCAACTGCTTCTGAAGAGAAAATCGTGAAGATTGTTAATGGAAGGATGACTGCAAATCTGTCAGATCTCTGCCCTTCCCTTTTACCACATCACCCTGTCAAATGATCAGTCAATTGGTATCTTGGTTAGAATGTCTATAGATCTGGAATAGGACACCTTGACACTTCCATTCCCTTCCAACCACCCCCCTTGCCCTTCCCCTACAAATAAGAACAATTCTCTTACACTTTATTCCATCCTGGAACTGCCACTGGACACACATATCAGCCCAACAGAGAGTTGAAAACAACCCATTAGCATGCAACAGCAAGCTTCCTCTGAAATGTACTTCCTGTTTAAAGAATGAAGATGTCCAAGGAGTTCAAAGCTACAGGGTCAGGGCTGCAACCCCAGAATCCTGGTCGCAGAGGGCTAAGGAAATGACCTGCCATGTCTGCGCCCTCAGAGCAAAAACTTTTACTGCGTTTCCCTCTTTATTAAAGAAGAGATCGATCCTCTGCAGCCTGAGTGAAGGAACTAAAGTCTGATGGGTCAGTGAGGCGAATCCTGAGCTATGGTGTCAAACTCCAGTCCTGGTTTCCCTCCAGGAGCAGTAGCTCTCTAAATTACTCTGATGGAATGATTTGCTGTTATTTAAGGCTCTTCAAAGCTTTTTTCTCTCGAATCGCAAGcctgtatgtactgtactgtactgtactatgcTATGCTGTGCCTTTGCTATGCTTTTGTATTATGTACACCTTTCATCAGGAGAACACAAAAGGGCAATTGGAAAAGAATGGCATGTGTCTGAATTATGTGTTctcttattatatttgtaaagggCTTTGTACAATGAATGTGTTCATATCTATAGTTTTGGCTCTGAGACATATTGCTTGCTGCAATAATTTTGATAGACTGATGGAAGAATACTGTGTCTTGCTGATTCCTGAACCTCTTCTTGATTTTACCATTCCAGTTCCTCTCAGAGATGTTCTATCTGCTGCATTGAGGTTAGAACTCTGGAATATTTTCTTTAGTATATAATGCACTATAACATGCTAtgctatattatactatataccATTGTCTCTATGTATACGTAAGAGCTattatatattcagtatatatatttatttattatcagcaCACTTGCCCCTTACAGGaactttgtattaaaaataacaaaactggcATTCAAAACCATTCTGAtcacctgtttttttgttgatcAGTTAGTTGGTTGTCCCTCAGTCCTCTTATCTTCTCAATCAGTGTCTGGAGCTTAAGTGAAAAAGTTTGGCACACCCTCCCCCCAATTATAAACTTTTGAACAACTGGAATCAGTGACAATCCTACTTTATGAAGATTTGTAATGCTAGTAGGAATTAAtcctttattaaatattttctcttcCTCATGTTTGCCATTTCCtgaattctgaaattaaaaaaaaaacggacaATGAGTTTTCATTAGGAGCAAGTAACCTGCAGAACTAATAAAATTGTGCTAAGTAGGTATTATTAAGCTGTTAGGCTATGTGTTCTGTGTGTATTAACTTGAAGATTTGGATGCtacgaaaataaaatatgattttgaaaatcTGCA
>TU120074
AGGCATCGGGGCAGATGCAGCAGAGTACTCTTTCAGATAAAAGAGAACCgGTGGGAGTCTGATGTCTCCAGGAAGGGGGTCGATCAAAAGCGACGTCACTGATGCAGGGTGGTATCCAAACGTCCTGAAACTAAAGATTTAAGACCGAAGAAACGCAAGACTCATAAACTTCCGGCTCTGCTACTTGTTACAGGGGTAAGGAAATTTGACTCCCATGTGTTGGAACTGACAGACGAAATGGTCAACCAAATGATCTTGTTATTTCTTGCCCTACTCCCTTGTGTGGCAGAAACTGCTCAGGCACAAGGACACACAGATTGTGGCAATTGTTATAAGATTGAACCAGGCGCCATGGTGGGCATCATCATCGGGGACGTGATCCTGACTGTGTTAATCGTCATCTCTGTCTATTACTGCGCCAGCCGCAAGAGACAGAAGAGAGAACAAGCTGATAAAGTCTACATGAACGTCAGAGCGAACGTCAAAGCCTGAAGCCCGAAATGCTTTCCTGCAGTGTGCGCCTGCCTCTCCTGCACTCTGTCCGTCTCTCCACACCAGCCTCCTGGAGCCAGATCCAGGGCCGAGGCCACCAGCCGACTACTACTATCAACTGCTTCTGAAGAGAAAATCGTGAAGATTGTTAATGGAAGGATGACTGCAAATCTGTCAGATCTCTGCCCTTCCCTTTTACCACATCACCCTGTCAAATGATCAGTCAATTGGTATCTTGGTTAGAATGTCTATAGATCTGGAATAGGACACCTTGACACTTCCATTCCCTTCCAACCACCCCCCTTGCCCTTCCCCTACAAATAAGAACAATTCTCTTACACTTTATTCCATCCTGGAACTGCCACTGGACACACATATCAGCCCAACAGAGAGTTGAAAACAACCCATTAGCATGCAACAGCAAGCTTCCTCTGAAATGTACTTCCTGTTTAAAGAATGAAGATGTCCAAGGAGTTCAAAGCTACAGGGTCAGGGCTGCAACCCCAGAATCCTGGTCGCAGAGGGCTAAGGAAATGACCTGCCATGTCTGCGCCCTCAGAGCAAAAACTTTTACTGCGTTTCCCTCTTTATTAAAGAAGAGATCGATCCTCTGCAGCCTGAGTGAAGGAACTAAAGTCTGATGGGTCAGTGAGGCGAATCCTGAGCTATGGTGTCAAACTCCAGTCCTGGTTTCCCTCCAGGAGCAGTAGCTCTCTAAATTACTCTGATGGAATGATTTGCTGTTATTTAAGGCTCTTCAAAGCTTTTTTCTCTCGAATCGCAAGcctgtatgtactgtactgtactgtactatgcTATGCTGTGCCTTTGCTATGCTTTTGTATTATGTACACCTTTCATCAGGAGAACACAAAAGGGCAATTGGAAAAGAATGGCATGTGTCTGAATTATGTGTTctcttattatatttgtaaagggCTTTGTACAATGAATGTGTTCATATCTATAGTTTTGGCTCTGAGACATATTGCTTGCTGCAATAATTTTGATAGACTGATGGAAGAATACTGTGTCTTGCTGATTCCTGAACCTCTTCTTGATTTTACCATTCCAGTTCCTCTCAGAGATGTTCTATCTGCTGCATTGAGGTTAGAACTCTGGAATATTTTCTTTAGTATATAATGCACTATAACATGCTAtgctatattatactatataccATTGTCTCTATGTATACGTAAGAGCTattatatattcagtatatatatttatttattatcagcaCACTTGCCCCTTACAGGaactttgtattaaaaataacaaaactggcATTCAAAACCATTCTGAtcacctgtttttttgttgatcAGTTAGTTGGTTGTCCCTCAGTCCTCTTATCTTCTCAATCAGTGTCTGGAGCTTAAGTGAAAAAGTTTGGCACACCCTCCCCCCAATTATAAACTTTTGAACAACTGGAATCAGTGACAATCCTACTTTATGAAGATTTGTAATGCTAGTAGGAATTAAtcctttattaaatattttctcttcCTCATGTTTGCCATTTCCtgaattctgaaattaaaaaaaaaacggacaATGAGTTTTCATTAGGAGCAAGTAACCTGCAGAACTAATAAAATTGTGCTAAGTAGGTATTATTAAGCTGTTAGGCTATGTGTTCTGTGTGTATTAACTTGAAGATTTGGATGCtacgaaaataaaatatgattttgaaaatcTGCA
>TU120078
AGGCATCGGGGCAGATGCAGCAGAGTACTCTTTCAGATAAAAGAGAACCgGTGGGAGTCTGATGTCTCCAGGAAGGGGGTCGATCAAAAGCGACGTCACTGATGCAGGGTGGTATCCAAACGTCCTGAAACTAAAGATTTAAGACCGAAGAAACGCAAGACTCATAAACTTCCGGCTCTGCTACTTGTTACAGGGGTGTTGGAACTGACAGACGAAATGGTCAACCAAATGATCTTGTTATTTCTTGCCCTACTCCCTTGTGTGGCAGAAACTGCTCAGGCACAAGGACACACAGATTGTGGCAATTGTTATAAGATTGAACCAGGCGCCATGGTGGGCATCATCATCGGGGACGTGATCCTGACTGTGTTAATCGTCATCTCTGTCTATTACTGCGCCAGCCGCAAGAGACAGAAGAGAGAACAAGCTGATAAAGTCTACATGAACGTCAGAGCGAACGTCAAAGCCTGAAGCCCGAAATGCTTTCCTGCAGTGTGCGCCTGCCTCTCCTGCACTCTGTCCGTCTCTCCACACCAGCCTCCTGGAGCCAGATCCAGGGCCGAGGCCACCAGCCGACTACTACTATCAACTGCTTCTGAAGAGAAAATCGTGAAGATTGTTAATGGAAGGATGACTGCAAATCTGTCAGATCTCTGCCCTTCCCTTTTACCACATCACCCTGTCAAATGATCAGTCAATTGGTATCTTGGTTAGAATGTCTATAGATCTGGAATAGGACACCTTGACACTTCCATTCCCTTCCAACCACCCCCCTTGCCCTTCCCCTACAAATAAGAACAATTCTCTTACACTTTATTCCATCCTGGAACTGCCACTGGACACACATATCAGCCCAACAGAGAGTTGAAAACAACCCATTAGCATGCAACAGCAAGCTTCCTCTGAAATGTACTTCCTGTTTAAAGAATGAAGATGTCCAAGGAGTTCAAAGCTACAGGGTCAGGGCTGCAACCCCAGAATCCTGGTCGCAGAGGGCTAAGGAAATGACCTGCCATGTCTGCGCCCTCAGAGCAAAAACTTTTACTGCGTTTCCCTCTTTATTAAAGAAGAGATCGATCCTCTGCAGCCTGAGTGAAGGAACTAAAGTCTGATGGGTCAGTGAGGCGAATCCTGAGCTATGGTGTCAAACTCCAGTCCTGGTTTCCCTCCAGGAGCAGTAGCTCTCTAAATTACTCTGATGGAATGATTTGCTGTTATTTAAGGCTCTTCAAAGCTTTTTTCTCTCGAATCGCAAGcctgtatgtactgtactgtactgtactatgcTATGCTGTGCCTTTGCTATGCTTTTGTATTATGTACACCTTTCATCAGGAGAACACAAAAGGGCAATTGGAAAAGAATGGCATGTGTCTGAATTATGTGTTctcttattatatttgtaaagggCTTTGTACAATGAATGTGTTCATATCTATAGTTTTGGCTCTGAGACATATTGCTTGCTGCAATAATTTTGATAGACTGATGGAAGAATACTGTGTCTTGCTGATTCCTGAACCTCTTCTTGATTTTACCATTCCAGTTCCTCTCAGAGATGTTCTATCTGCTGCATTGAGGTTAGAACTCTGGAATATTTTCTTTAGTATATAATGCACTATAACATGCTAtgctatattatactatataccATTGTCTCTATGTATACGTAAGAGCTattatatattcagtatatatatttatttattatcagcaCACTTGCCCCTTACAGGaactttgtattaaaaataacaaaactggcATTCAAAACCATTCTGAtcacctgtttttttgttgatcAGTTAGTTGGTTGTCCCTCAGTCCTCTTATCTTCTCAATCAGTGTCTGGAGCTTAAGTGAAAAAGTTTGGCACACCCTCCCCCCAATTATAAACTTTTGAACAACTGGAATCAGTGACAATCCTACTTTATGAAGATTTGTAATGCTAGTAGGAATTAAtcctttattaaatattttctcttcCTCATGTTTGCCATTTCCtgaattctgaaattaaaaaaaaaacggacaATGAGTTTTCATTAGGAGCAAGTAACCTGCAGAACTAATAAAATTGTGCTAAGTAGGTATTATTAAGCTGTTAGGCTATGTGTTCTGTGTGTATTAACTTGAAGATTTGGATGCtacgaaaataaaatatgattttgaaaatcTGCA

Function

GO:

id name namespace
GO:0051674 localization of cell biological_process
GO:0050900 leukocyte migration biological_process
GO:0006928 movement of cell or subcellular component biological_process
GO:0016477 cell migration biological_process
GO:0048870 cell motility biological_process
GO:0040011 locomotion biological_process
GO:0030595 leukocyte chemotaxis biological_process
GO:0060326 cell chemotaxis biological_process
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
ko04611 Platelet activation
ko04660 T cell receptor signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU120071 False 2182 lncRNA 0.42 6 4894754 4911505
TU120072 True 2203 lncRNA 0.42 6 4894754 4911505
TU120074 False 2199 lncRNA 0.42 6 4894754 4911505
TU120078 False 2178 lncRNA 0.42 6 4894754 4911505

Neighbor

gene id symbol gene type direction distance location
AMCG00015208 NA coding downstream 22034 4871054 ~ 4872720 (-)
AMCG00015209 NA coding downstream 23725 4870014 ~ 4871029 (-)
AMCG00015202 LOC106605622 coding downstream 215703 4670704 ~ 4679051 (-)
AMCG00015199 NA coding downstream 264532 4619364 ~ 4630222 (-)
AMCG00015195 NA coding downstream 441807 4436545 ~ 4452947 (-)
AMCG00015217 NA coding upstream 178329 5089834 ~ 5113520 (-)
AMCG00015216 NA coding upstream 207693 5119198 ~ 5125146 (-)
AMCG00015220 NA coding upstream 251902 5163407 ~ 5166705 (-)
AMCG00015219 NA coding upstream 286582 5198087 ~ 5213200 (-)
AMCG00015227 NA coding upstream 323627 5235132 ~ 5241035 (-)
G96271 NA non-coding downstream 5433 4882069 ~ 4889321 (-)
G96208 NA non-coding downstream 225468 4668903 ~ 4669286 (-)
G96148 NA non-coding downstream 501774 4390840 ~ 4392980 (-)
G96136 NA non-coding downstream 550685 4343868 ~ 4344069 (-)
G96134 NA non-coding downstream 557483 4337009 ~ 4337271 (-)
G96314 NA non-coding upstream 104881 5016386 ~ 5016609 (-)
G96318 LOC100846954 non-coding upstream 109755 5021260 ~ 5022065 (-)
G96329 NA non-coding upstream 126785 5038290 ~ 5038491 (-)
G96375 NA non-coding upstream 245282 5156787 ~ 5157140 (-)
G96385 NA non-coding upstream 282318 5193823 ~ 5194138 (-)
AMCG00015203 NA other downstream 91850 4778393 ~ 4802904 (-)
G96191 NA other downstream 275490 4617711 ~ 4619264 (-)
G96094 NA other downstream 714313 4174879 ~ 4180441 (-)
AMCG00015180 NA other downstream 770791 4110319 ~ 4123963 (-)
AMCG00015164 NA other downstream 1287562 3603683 ~ 3607192 (-)
AMCG00015210 NA other upstream 56545 4968050 ~ 4976350 (-)
AMCG00015211 NA other upstream 74067 4985572 ~ 5083187 (-)
AMCG00015230 NA other upstream 482881 5394386 ~ 5463028 (-)
AMCG00015244 NA other upstream 842088 5753593 ~ 5757109 (-)
AMCG00015257 NA other upstream 1113863 6025368 ~ 6072125 (-)

Expression


Co-expression Network