G96420


Basic Information

Item Value
gene id G96420
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 5426879 ~ 5465434 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU120218
CCAGAAAGATGATGAGTTTGCCCTTCCTTTAGGTGGCCTGGTGGGCAGCGCCAATGAGTTTGGGATATCCTGGAGAATGGAGGGTGGAAAGGAGCTGTGTGGTGATTTCTGTCTGCAGGGAGGCTGCCCCAAACTGGGAGATAAGGAGAGAGAAGAGCTGACAAAATCTGACAAGTGCGGCCTGATCTCAGCTCCCAATGGACCACTGGCCGCTTGTCACCCAGTGCTTCCCCCAGCAGGCTTCCTGGAAAATTGCATTGCCAACAGCTTCACAGTGGGAGGCAAAACAGAAGCCGTATGTCTGGGGATCCAGGCTTACGTTACTGTCTGCCAGGAGGCTGGGGTGACCTTGAAAGACTGGAGGAGTCGCAGCTTCTGTCCTTTCTCATGCCCTGCCAACAGCCACTACAGTCTTTGTGCCGACACATGTCACAACAACTGCATGGGGATAACCAACCCGCAGCTCTGCTCGAAGGACTGCTCAGAGGGATGTGAGTGTGACACGGGCTTTGTGGCAGATGGGGATAAGTGTGTCGAGATACAGGACTGTGGCTGTGAGGTGGATGGGATGTACTTGAAGAGTGGAGAGATCATCTACATTAACAAGTGCACCCAGAAATGCAGCTGTAGCTCCAGGCACAACTCTATATGTGAGGAGACCTCCTGCCCAGCCAACACCCAGTGTGCGGTGAGGAA
>TU120220
TGGTGACAAGAAAGATGACCTGCTTATGCCCAATGGTCAAAAGGCCAATAATCCCACACAGTTTGGCAACAGCTACAAAGTGGGCGATGCCCTCGGCTGCTCCTCTGAGTGCAAAGACTGTGCCCAGACACCTCCTACCCCCGCCCCTGGGGAGAAACCTCCACCCTATGTGGCTGACTGTGATGTGATCACCGATCCCAAAGGGCCCCTGGGCGACTGCCTGGGTAAGGTAGACTATGCTCGCTTCCATGGCAGCTGCATGTTCGACATCCAGCTGAACAAGGGCCTACAGAAAGCAGCTTGTGACGCCATCGCTGCCTATGTGGAGCAATGTCAAGACGCCGGGGGCCAAATAAGTAATTGGAGGAAGAAGGACTTCTGTGCTCTTTCCTGCCCGAAGAACAGCGAGTACAGCACTTGTGCTCC
>TU120221
CCAGAAAGATGATGAGTTTGCCCTTCCTTTAGGTGGCCTGGTGGGCAGCGCCAATGAGTTTGGGATATCCTGGAGAATGGAGGGTGGAAAGGAGCTGTGTGGTGATTTCTGTCTGCAGGGAGGCTGCCCCAAACGGGAGATAAGGAGAGAGAAGAGCTGACAAAATCTGACAGGTGTGGCCTGATCTCAGCTCCCAAAGGACCACTGGCCGATTGTCAACCAGTGTTTCCCCCAGCAGGCTTCCTGGAAAATTGCATTGCCAACAGCTTCACAGTGGGAGGCAAGACAGAAGCCGTGTGTCTGGGGATCCAGGCTTACGTTACTGCCTGCCAGGAGGCTGGGGTGACCCTGAAAGACTGGAGGAGCCGCAGCTTCTGTCGTAAGTACTGGGGAACCCCGATGCATTTCAGTAATGTGGCTCTAACTTAAATTTTTCCAGACACTTCTGCTTTTCTGTCTATTTCACATCCTCATGACTTAGTGAATATTACTCAAGATGTGTAGATCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU120218 True 696 TUCP 0.54 3 5432605 5434022
TU120220 False 426 TUCP 0.55 3 5426879 5464117
TU120221 False 508 lncRNA 0.51 2 5432605 5465434

Neighbor

gene id symbol gene type direction distance location
AMCG00015223 NA coding upstream 28500 5394380 ~ 5398379 (+)
AMCG00015221 NA coding upstream 74944 5319558 ~ 5351935 (+)
AMCG00015214 NA coding upstream 290043 5129341 ~ 5136836 (+)
AMCG00015218 NA coding upstream 361636 5064320 ~ 5065243 (+)
AMCG00015213 NA coding upstream 379691 5042501 ~ 5047188 (+)
AMCG00015225 NA coding downstream 6148 5471582 ~ 5476576 (+)
AMCG00015237 NA coding downstream 37031 5502465 ~ 5509697 (+)
AMCG00015241 NA coding downstream 83761 5549195 ~ 5559773 (+)
AMCG00015236 NA coding downstream 94644 5560078 ~ 5570355 (+)
AMCG00015234 NA coding downstream 131612 5597046 ~ 5603355 (+)
G96384 NA non-coding upstream 232700 5193972 ~ 5194179 (+)
G96326 NA non-coding upstream 390608 5036038 ~ 5036271 (+)
G96205 NA non-coding upstream 756704 4669472 ~ 4670175 (+)
G96204 NA non-coding upstream 757489 4668893 ~ 4669390 (+)
G96203 NA non-coding upstream 758095 4668322 ~ 4668784 (+)
G96512 NA non-coding downstream 286734 5752168 ~ 5753255 (+)
G96513 NA non-coding downstream 289649 5755083 ~ 5755350 (+)
G96543 NA non-coding downstream 399610 5865044 ~ 5919123 (+)
G96568 NA non-coding downstream 559911 6025345 ~ 6067602 (+)
G96572 NA non-coding downstream 585964 6051398 ~ 6064774 (+)
G96415 NA other upstream 35156 5388937 ~ 5391723 (+)
AMCG00015215 NA other upstream 307478 5084574 ~ 5119401 (+)
AMCG00015212 NA other upstream 348976 5068047 ~ 5077903 (+)
G96317 LOC100846954,LOC107575789 other upstream 404827 5021366 ~ 5022052 (+)
G96264 NA other upstream 546983 4876121 ~ 4879896 (+)
AMCG00015277 NA other downstream 1220917 6686351 ~ 6691799 (+)
AMCG00015293 NA other downstream 1532163 6997597 ~ 7080788 (+)
G97006 NA other downstream 1949935 7415369 ~ 7415762 (+)
AMCG00015324 esrra,LOC107669367,LOC107715365,LOC104926321,LOC106534575 other downstream 2480774 7946208 ~ 7956114 (+)
AMCG00015334 NA other downstream 2608747 8074181 ~ 8078832 (+)

Expression


Co-expression Network