G96572


Basic Information

Item Value
gene id G96572
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 6051398 ~ 6064774 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU120405
CGTCAGGGCAAGAATTGGAGCAAATTTGTTTTGCATCTAATTTtctaaacccccccccccccccaaagagaggtttaaaataactaaaatacataaataagtaaaatcgCATTGCTCCATAACTACTTCTACACATTTCaagtttcaaaatgtaattaggaaaacacaataaaataaatgactttcaTTTGCCATGCGGTAAACTAACTACAGGCACATCCTCTTGGTGTTTGTGCTGAAGGATGTGAATTGCATACCTCTTGTCCTGCTTGAACTTGCAGCGGCAGTGTCCACCTGCGACACAGAAGAGAAAGAGGTCAGGGCGATTATTTCACTCTCAAGAGGGGAAAGGGCAGGTAAAAGAGCCACAGCAGAACTGGGGGCAAGTGTTACAGAGCAATTAGTTGCACACGGTGTTCACCGAGCCATTCCTGCATTGCACCTTACTCTATTTGtgggtttaatttgtattaaagcataaaataaactatttgaaagtgcaaactGTCTTAACCACCTTAGACAAGCCCTCTACTGCCACGCCTTCTTTACATGCATGTATCCTACAGCCATCCAATTTCACCCTAGGAAGTCATGCATTTGAAGGGAGTCTCACTGGAGATCAGTTTACCAGATCCCAGCCAGATTAAGACCAGCAtcctcttaaaataaattaaacacatgcaACTATCAAACCAATTAGCAGGACCGTCCGAGGGATCTGCTTCCAGAACCTATTGTGGTGTTGGAGCCTGCTCCCGTTTTATGCCAGGTGTTGTGTAGCATAAGCAAGTGCATGTTGTGGTGTCGGCTTTCAGGGCTGCTTGTGTTAATCTGGCAGGACTCCAAGGCAATGGGCAGAGTGCTACCCTCCCACCATAAGCAGTGGAACACCAGTAAGCGGTACGGGAGTGGTTTCTGTACTCACTGAGCAGGATGGTGATGCCgatcacacacagcacagcagacagGATCAGACCTCCCACTCGCAACTTGTAATAATCTGGAGGGAGGAATGGGACAGAAGGACAGTAAGTGAACAGACGTGGgataaagagagaggggaggtgaAAGACAAGGACCGTGAGGAATAGGGAGAGTgaaagagtgagggagagggctGTGAAGAGATGGTAGATTTGGGTAAATGTGGAATGGAGAGTTATTACTCACCAAAGGTAAAAGGATCCTCCtcttctaaaacaaacaaaacgaaaGAAAGCAAGTTAGTTTTCAGGTCGTAttgcaatacaattttaaattgtcaAAGTCAGCTGGACCCAGGGCCCCGCTATGCTGTCTGTAGGCTTCACACGAGTGCCAGGCTTTTTCTAACTTTGTATGCAGGGTTACAGAAGAGGTAAAAACTAATAACTTTTATTGCAGGAATAACACAGTTTATGCAAGTTTACCTCCGTAGAATTTGCAGAGCAGTTTTGTGTTCTAGGATACAATCACAGTCAAGCAACAGTAGATTTACAGTGGTTTCCAATGGCTTGGACTCCACCATCAATAAACCAGTCTACAATTCTATGGGCCTTAGAAACGTGGGTAATTGTATCATGGTATTAAAGGATTCAGGGCGGGGTCTGTGGAGTTTTGTTGATGAACGTACCTTCTTGCTCTGCCAAGGCGAACGAAAAAACCTGTGAGGAGAACCAAGGCGCTGATCTTTGCCATCTTTACAGCTTCGACCTCTCAGATCCAGAAAAAGACgggatttttttgggggggggatatAAGCAGGAAGAGCCGAACAGCCCGGTATAAAAGTCACCTATTGACTTAGGCAAATGCCGACACCCTGTCCCGACACAAGGCGCTCAACAGGTTGGCTGGGCTGCTGAAGGGGGCTGGGCGAGCTGGGCGAGCTGGGCGAGGTGGGCGAGGGAGCCGGCGGGGTTTAATGCTTTGTGTGCGAGGCCCGCTGACTCGGGAATGAGCGCGGTTTCATTGGCAGAGGAGGCGAGGGGGGAGGCGAGTGATTAGCTCACTCAGTGCAGGGCCGTCTGAAATGCAGACAAAGGCCCCTATTGAAACTTTTCGCTGGCTACGTTTCTAATGGGTCTGTGGGACGTTAGCAGGGGAGAAAAAGTCCCACAATAAGTGGTATTATTTACAGGGAcctaaattatacatatatatgctgCAGAATAATCGGCAATCTTTCTTTCTCAGTAAACTCAaatttcaaacatttgtttagaaagaaatatcccctctctctgctctcctaTCCTAGCAAGCTGCTTTACAAACCGAGCTCACCAATAATATGCTTAATTGCCCAAAGATTCCCACAGTTCCTGGTGTTGAGCCATATGATCTGTAAAATATGTGCCTCTCCAGGACTAGAGATTAACATTGGATCACCAACTATTGGACCTGCTCATACTTTCTGATGGAGAGCTCTATAATAATCATCAatcaattgatttaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU120405 True 2442 lncRNA 0.45 3 6051398 6064774

Neighbor

gene id symbol gene type direction distance location
AMCG00015254 tmem147,LOC106605633 coding upstream 4722 6039508 ~ 6046676 (+)
AMCG00015253 gapdhs,LOC107577408,LOC107709572,LOC107686531 coding upstream 15907 6027825 ~ 6035491 (+)
AMCG00015255 NA coding upstream 33156 6005307 ~ 6018242 (+)
AMCG00015252 NA coding upstream 79283 5959682 ~ 5972115 (+)
AMCG00015245 NA coding upstream 240469 5798493 ~ 5810929 (+)
AMCG00015262 NA coding downstream 80037 6144811 ~ 6157310 (+)
AMCG00015264 NA coding downstream 184388 6249162 ~ 6257319 (+)
AMCG00015265 NA coding downstream 222811 6287585 ~ 6297209 (+)
AMCG00015263 NA coding downstream 238509 6303283 ~ 6309661 (+)
AMCG00015268 NA coding downstream 246192 6310966 ~ 6312632 (+)
G96543 NA non-coding upstream 132275 5865044 ~ 5919123 (+)
G96513 NA non-coding upstream 296048 5755083 ~ 5755350 (+)
G96512 NA non-coding upstream 298143 5752168 ~ 5753255 (+)
G96424 NA non-coding upstream 592350 5457833 ~ 5459048 (+)
G96384 NA non-coding upstream 857219 5193972 ~ 5194179 (+)
G96591 NA non-coding downstream 52841 6117615 ~ 6118160 (+)
G96668 NA non-coding downstream 206563 6271337 ~ 6273388 (+)
G96671 NA non-coding downstream 210594 6275368 ~ 6275601 (+)
G96697 NA non-coding downstream 313997 6378771 ~ 6385567 (+)
G96710 NA non-coding downstream 364815 6429589 ~ 6431235 (+)
G96420 NA other upstream 585964 5426879 ~ 5465434 (+)
G96415 NA other upstream 659675 5388937 ~ 5391723 (+)
AMCG00015215 NA other upstream 931997 5084574 ~ 5119401 (+)
AMCG00015212 NA other upstream 973495 5068047 ~ 5077903 (+)
G96317 LOC100846954,LOC107575789 other upstream 1029346 5021366 ~ 5022052 (+)
AMCG00015277 NA other downstream 621577 6686351 ~ 6691799 (+)
AMCG00015293 NA other downstream 932823 6997597 ~ 7080788 (+)
G97006 NA other downstream 1350595 7415369 ~ 7415762 (+)
AMCG00015324 esrra,LOC107669367,LOC107715365,LOC104926321,LOC106534575 other downstream 1881434 7946208 ~ 7956114 (+)
AMCG00015334 NA other downstream 2009407 8074181 ~ 8078832 (+)

Expression


Co-expression Network