G96642


Basic Information

Item Value
gene id G96642
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 6118621 ~ 6119653 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU120496
tgccttcctggatgaactcatccaagaagatttcatttgtgaacgttgttggCATGTTGAAGTCTTAGAGATCAaatctgtgatcttgaggctcaacttgttgatctgcgctgtattagagATATAGAGGAATttgtcaatcagcccatgagagagatNNNNNNNNNNCctaaacctaggagagttgagagcaggaaagtgtagagaactgctgggttacagttaggtcgtaaccgcagaaaagggaaGTAGTtctagtaggagactcaatccTTGGAGgtatagatcacacagtgtgttctagtgataaggagacctgcaagatatcttgcctgcctggtgctcaggttgtaNNNNNNNNNNaactagtagatgggctactggccaaagccagggggaatcccctggtcatggtccacattggaaccaatgacataggaaaatgaaggacagaggttctgctaGACAAAGACTAGGAACAAGGTCAGGATGTGGACATAACAGATGTGGCtattataatgggggatttcaatttcccaaacaatGAGTGGGCAAGCCTAGTTGGGACTGCAGAAGTataaatagaaatggttgagatggtaaacaACTGCTTTCTTACTCAATTCGTCAAGGAAACAACCAGaaagagagcatgcattgacttgatcttttcaaatggccaagatagagtcagatgGACACTaattagagaaccaatggcaaactgtgatcaccaTATGATTAGCTTTGAGGCTACTTAGCCTGGAGtgcactggatacagattcagttgaaaNNNNNNNNNNatattttaagaatattctaCTTGGGGCTCAGGAGAAATGtataccaaaacttagcaaattgaggaccaaaNNNNNNNNNNcaaaatggtttaatagaagtatgcaaaacatagctaaagaaagaaaatgctgtatagcacatacaaaagggatataGACTAAACCAAATACAatgaatatgttgaactgcaaagagatcttaagaaaggaatcaggaaagcaaatagGG

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU120496 True 1033 lncRNA 0.39 1 6118621 6119653

Neighbor

gene id symbol gene type direction distance location
AMCG00015259 NA coding downstream 21603 6084877 ~ 6097018 (-)
AMCG00015260 NA coding downstream 35130 6078223 ~ 6083491 (-)
AMCG00015258 NA coding downstream 110377 5975211 ~ 6008244 (-)
AMCG00015251 NA coding downstream 204684 5900594 ~ 5913937 (-)
AMCG00015247 NA coding downstream 238431 5865044 ~ 5880190 (-)
AMCG00015261 NA coding upstream 4447 6124100 ~ 6144724 (-)
AMCG00015270 dyrk1b,LOC106605641,LOC106578455,LOC107685988,LOC107737818,LOC107666783 coding upstream 310965 6430618 ~ 6440642 (-)
AMCG00015272 fbl,LOC107719117,LOC107666874,LOC102785674,LOC107737817 coding upstream 368789 6488442 ~ 6501219 (-)
AMCG00015273 LOC108437392,LOC105891768,LOC107719116,LOC107737835,LOC108256255,LOC107666762 coding upstream 395713 6515366 ~ 6525807 (-)
AMCG00015275 NA coding upstream 470540 6590193 ~ 6591000 (-)
G96609 NA non-coding downstream 86494 5927459 ~ 6032127 (-)
G96532 NA non-coding downstream 326007 5792403 ~ 5792614 (-)
G96531 NA non-coding downstream 329774 5786397 ~ 5788847 (-)
G96479 NA non-coding downstream 561116 5557251 ~ 5557505 (-)
G96462 NA non-coding downstream 653297 5432605 ~ 5465324 (-)
G96643 NA non-coding upstream 1001 6120654 ~ 6121002 (-)
G96650 NA non-coding upstream 37450 6157103 ~ 6223629 (-)
G96653 NA non-coding upstream 108861 6228514 ~ 6228776 (-)
G96696 NA non-coding upstream 235367 6355020 ~ 6362409 (-)
G96873 NA non-coding upstream 867747 6987400 ~ 7063937 (-)
AMCG00015257 NA other downstream 46496 6025368 ~ 6072125 (-)
AMCG00015256 NA other downstream 54462 6049477 ~ 6064159 (-)
AMCG00015244 NA other downstream 361512 5753593 ~ 5757109 (-)
AMCG00015230 NA other downstream 655593 5394386 ~ 5463028 (-)
AMCG00015211 NA other downstream 1035434 4985572 ~ 5083187 (-)
AMCG00015267 NA other upstream 249101 6368754 ~ 6384620 (-)
AMCG00015271 NA other upstream 290994 6410647 ~ 6419481 (-)
G96766 NA other upstream 579204 6698857 ~ 6700357 (-)
AMCG00015283 NA other upstream 750809 6870462 ~ 6877734 (-)
AMCG00015285 NA other upstream 771582 6891235 ~ 6896427 (-)

Expression


Co-expression Network