G96668


Basic Information

Item Value
gene id G96668
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 6271337 ~ 6273388 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU120528
ggtacgtgtcagcgtggtgatgttctgggtgtaggagagcacaggatcgagggtgactcctagattttttgcggaagaagaaggagagagggtggtggattccaaggggatcgagatggagagatcagcagaaggtgaggaagagtgggggaaaaacagcagaaccgatttggagaggttgagcttgaagtGGTGTGactgcatccaggtggagataccagacaaacaggaagagatgtgagaggggatgagagggtcagaagagggaaaagacaggaagatctgggcattaTCAGCATTACTCCCgcaatccaaacaaaacaagGCAGGTGCTTGCCAGTACACCTGAGGGGAACTGTGAGGGACAAGAGAGGGAATCTCACCATTAATTGAAAAGAAGAtcagacaagaaaacaatggGAAGAAGTGCAACACATTGTCATGCTGTCTGTCTGCACCTCCTCCAGCTCACCACCAGATGTAATTCTCCTCTCATGTCATTATTCCATTATCCCTAGCACCTGTTCTTGATTTCCCTCACTCAAACACCCAGTGTATTTAAGCCCAGCTGAAAGCCTAGATCAACGTGAAGTCATTGTTTGCGCTAGTATCAGTTTCCAAGCCTTTCCTAGTGCCCCGCTCTTTCGTGTTTGACCCTTGCTTCCCCTTAGCCACTGTTCTTCGGATTTCCTTATTGTCTTCTGTTATTTCTATTGTTTCTGGATTACCTGCATTGCCCTGTTTGCTTGTCTCTCGACCTCTGCCTGTTCTCCTGACCACGTTTTCGGAACTGTCTCTGCTACTGCTGTTTACCGGCCCCAACCTCCCTGCCTGGATAGAACTTGCTCCGCGCCTGGGTCCCCGTTCGCCTGGTCAGTGCACCATGACCGACCTGACACACATAATgtgaaaattataatgaaaaaacgtaattaaattaaaacaagtgtttgtgtatttcaattattttgaaaataataagcTGTGCTTATAGCGACAGACATTATCACATTGAGCATGGGTTAAATAATAGTGCTCTGTATCTTTGTCTactgctttttaatgtttgcataTGGCTGAATGCAGTACGTTACTATAATTTTTACAAGAATTTGTTATTCATTGCCATATATACGGGTTATAACagtatattctgtatttatttccaaaaagcATTAATGCAACTAGGAAATGTGGTAGCGTTACAGAAATTGACAGGCAAATACGAAAGTTTACAGTTAACAtttaatctatacatttttaaaaagccacCAATAAAAATGGCATGCAATATCCTGCAGTAGTGCTAGGACAACATTTAGGGAACCTGTAATACACGTCCTCTAAAAGTATTGGTAATGGCACAGGGACATCATAGAAAGTACACAAAAGACGTCCCAATAAACATTTAGGAACCCTACAAAATAATGTCCTGGTGATGTTTACTTGTGACATTCTTTTATGGTTTTGGGAATGGTACAGGGATGTTCATAGGACGCCATAGGAAGGTCATAAAAGACATCCAGGGAACCCTATAAAATAACGTCTCATTAATGTTGGTTTATGACGTTCTTTTATGGTCTTGGGAATGGCACAGGGACATTCACAGAACGTCATAAGAATGTCACAAAACACGTCCTGTGAAACACTTAGGGAACCCTACAAAAAAGCATTCTGGTAACGTTAGTTTGCAACGTCCTTACAACTTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU120528 True 1710 lncRNA 0.42 2 6271337 6273388

Neighbor

gene id symbol gene type direction distance location
AMCG00015264 NA coding upstream 14018 6249162 ~ 6257319 (+)
AMCG00015262 NA coding upstream 114027 6144811 ~ 6157310 (+)
AMCG00015254 tmem147,LOC106605633 coding upstream 224661 6039508 ~ 6046676 (+)
AMCG00015253 gapdhs,LOC107577408,LOC107709572,LOC107686531 coding upstream 235846 6027825 ~ 6035491 (+)
AMCG00015255 NA coding upstream 253095 6005307 ~ 6018242 (+)
AMCG00015265 NA coding downstream 14197 6287585 ~ 6297209 (+)
AMCG00015263 NA coding downstream 29895 6303283 ~ 6309661 (+)
AMCG00015268 NA coding downstream 37578 6310966 ~ 6312632 (+)
AMCG00015266 NA coding downstream 70409 6343797 ~ 6344918 (+)
AMCG00015269 rbm42 coding downstream 112278 6385666 ~ 6389631 (+)
G96591 NA non-coding upstream 153177 6117615 ~ 6118160 (+)
G96568 NA non-coding upstream 203735 6025345 ~ 6067602 (+)
G96572 NA non-coding upstream 206563 6051398 ~ 6064774 (+)
G96543 NA non-coding upstream 352214 5865044 ~ 5919123 (+)
G96513 NA non-coding upstream 515987 5755083 ~ 5755350 (+)
G96671 NA non-coding downstream 1980 6275368 ~ 6275601 (+)
G96697 NA non-coding downstream 105383 6378771 ~ 6385567 (+)
G96710 NA non-coding downstream 156201 6429589 ~ 6431235 (+)
G96716 NA non-coding downstream 182444 6455832 ~ 6490523 (+)
G96767 NA non-coding downstream 428224 6701612 ~ 6703094 (+)
G96420 NA other upstream 805903 5426879 ~ 5465434 (+)
G96415 NA other upstream 879614 5388937 ~ 5391723 (+)
AMCG00015215 NA other upstream 1151936 5084574 ~ 5119401 (+)
AMCG00015212 NA other upstream 1193434 5068047 ~ 5077903 (+)
G96317 LOC100846954,LOC107575789 other upstream 1249285 5021366 ~ 5022052 (+)
AMCG00015277 NA other downstream 412963 6686351 ~ 6691799 (+)
AMCG00015293 NA other downstream 724209 6997597 ~ 7080788 (+)
G97006 NA other downstream 1141981 7415369 ~ 7415762 (+)
AMCG00015324 esrra,LOC107669367,LOC107715365,LOC104926321,LOC106534575 other downstream 1672820 7946208 ~ 7956114 (+)
AMCG00015334 NA other downstream 1800793 8074181 ~ 8078832 (+)

Expression


Co-expression Network