G96767


Basic Information

Item Value
gene id G96767
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 6701612 ~ 6703094 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU120661
TTGCTGGAGCTGCGCAGCTCTCTGACAGTGAACCAAGCAGCCAATCAAAGTTACACTTTCCAGCTGAGCAACCCTGTGCTCAAGCAAACCATCAGGAGGACTGTGACCAGGCTCCCGTGTGTCTGGAGCAATGAAGTCATGTCTACTGGTCCTACTGCTGACGATTTCAAGACTGGTTTGGTGATGTGTGGAGTGGGAGATGACCAAGGACAGAGACCGATGTGGAATGGATATGGCATCTCTGGAAGTGCCAGTACATTTCAGCTACACAAGTTCGCTCTGAATTATATCTGTACTTTCACTTTGAAGTTtaactttcattttcaatttctctGTGATGTTGGTTATTAGGCCTGATTTTACTCCTCCGCACATAGTAGCCAACAGATGCCACTACCATATTTCTGCTTTTACCTGAACAATCACTGACCACCTTCTGGAGATTACTGAAGACACCTCTGTTCTGACTTTACCTGAAATATAGCAGCCATATCTTCTGCTTTGCTCAACACTCTTGCCATTATGCACTTTTGAACTATGTCAtatgtacttatgtattgttagcactttgATTGTGTTACTGCAATCCTATGTCCCCCCTCTTTACACATACCTGGGACTTAACTgtatcatgtctgcacttgttagctcattgtactacTGTAATGACCTTGTGCATGTCTAATTGTGTGATTATTAAGCTTCAGGCGCCGTGGGTTTACCCATTATAAATGGGTATATAACAGGGGAGAGGGAGTCTGAACCAGGGGCGTTGCTAGACTTCAGGTTGTAGGGGGGCTACAGCCcagaatgttttatgaatatccCCCGATCTCAAATATTTcttgctgacagtgttttcgTATTATTGAAAGACACGCACATCTGTATATAATCGTGCAGCAATGCCGTTATGGTAAATAATCGGAGTACAGATATATTTTGGGAATTGGATCAAAAGACCCGGGGCTAAACCCCCGAAGCCCAGGTCTAACGACGCAATTGGTCCTGGAGGATCCCTACCCTgagctctcaatgacttaattgaacccatAACTGAAGTAAAAATGTGCttgcatttgactttttaaattgtgtNNNNNNNNNNaagttggttccttaataagataagtattatacaattttatacttaacttaaaatccctactgtttaaaataatgaaaaggctctgatttaggaaatgattagttcaatNN
>TU120662
TTGCTGGAGCTGCGCAGCTCTCTGACAGTGAACCAAGCAGCCAATCAAAGTTACACTTTCCAGCTGAGCAACCCTGTGCTCAAGCAAACCATCAGGAGGACTGTGACCAGGTGGGCCTGGTTTGGGGGCACAGGAGGGGCTTAAAGCATTGCACACCCTTATCTCACGGGTGTTACTCAATACTGTTATTATCATGACTGAGATTATTCAGCAGATGTCAAAGGCTCCCGTGTGTCTGGAGCAATGAAGTCATGTCTACTGGTCCTACTGCTGACGATTTCAAGACTGGTTTGGTGATGTGTGGAGTGGGAGATGACCAAGGACAGAGACCGATGTGGAATGGATATGGCATCTCTGGAAGTGCCAGTACATTTCAGCTACACAAGTTCGCTCTGAATTATATCTGTACTTTCACTTTGAAGTTtaactttcattttcaatttctctGTGATGTTGGTTATTAGGCCTGATTTTACTCCTCCGCACATAGTAGCCAACAGATGCCACTACCATATTTCTGCTTTTACCTGAACAATCACTGACCACCTTCTGGAGATTACTGAAGACACCTCTGTTCTGACTTTACCTGAAATATAGCAGCCATATCTTCTGCTTTGCTCAACACTCTTGCCATTATGCACTTTTGAACTATGTCAtatgtacttatgtattgttagcactttgATTGTGTTACTGCAATCCTATGTCCCCCCTCTTTACACATACCTGGGACTTAACTgtatcatgtctgcacttgttagctcattgtactacTGTAATGACCTTGTGCATGTCTAATTGTGTGATTATTAAGCTTCAGGCGCCGTGGGTTTACCCATTATAAATGGGTATATAACAGGGGAGAGGGAGTCTGAACCAGGGGCGTTGCTAGACTTCAGGTTGTAGGGGGGCTACAGCCcagaatgttttatgaatatccCCCGATCTCAAATATTTcttgctgacagtgttttcgTATTATTGAAAGACACGCACATCTGTATATAATCGTGCAGCAATGCCGTTATGGTAAATAATCGGAGTACAGATATATTTTGGGAATTGGATCAAAAGACCCGGGGCTAAACCCCCGAAGCCCAGGTCTAACGACGCAATTGGTCCTGGAGGATCCCTACCCTgagctctcaatgacttaattgaacccatAACTGAAGTAAAAATGTGCttgcatttgactttttaaattgtgtNNNNNNNNNNaagttggttccttaataagataagtattatacaattttatacttaacttaaaatccctactgtttaaaataatgaaaaggctctgatttaggaaatgattagttcaatNN

Function

GO: NA

KEGG:

id description
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
TU120661 False 1218 lncRNA 0.41 2 6701612 6703094
TU120662 True 1331 lncRNA 0.42 2 6701612 6703094

Neighbor

gene id symbol gene type direction distance location
AMCG00015269 rbm42 coding upstream 311981 6385666 ~ 6389631 (+)
AMCG00015266 NA coding upstream 356694 6343797 ~ 6344918 (+)
AMCG00015268 NA coding upstream 388980 6310966 ~ 6312632 (+)
AMCG00015263 NA coding upstream 391951 6303283 ~ 6309661 (+)
AMCG00015265 NA coding upstream 404403 6287585 ~ 6297209 (+)
AMCG00015276 NA coding downstream 12646 6715740 ~ 6729138 (+)
AMCG00015280 NA coding downstream 97863 6800957 ~ 6802081 (+)
AMCG00015281 NA coding downstream 101562 6804656 ~ 6805912 (+)
AMCG00015284 NA coding downstream 107773 6810867 ~ 6885373 (+)
AMCG00015289 LOC101167647,LOC102779956,LOC107379074 coding downstream 288009 6991103 ~ 6996754 (+)
G96716 NA non-coding upstream 211089 6455832 ~ 6490523 (+)
G96710 NA non-coding upstream 270377 6429589 ~ 6431235 (+)
G96697 NA non-coding upstream 316045 6378771 ~ 6385567 (+)
G96671 NA non-coding upstream 426011 6275368 ~ 6275601 (+)
G96668 NA non-coding upstream 428224 6271337 ~ 6273388 (+)
G96837 NA non-coding downstream 214712 6917806 ~ 6921641 (+)
G96915 NA non-coding downstream 442857 7145951 ~ 7146204 (+)
G96936 NA non-coding downstream 513546 7216640 ~ 7225338 (+)
G96992 NA non-coding downstream 661289 7364383 ~ 7364984 (+)
G97059 NA non-coding downstream 930287 7633381 ~ 7649307 (+)
AMCG00015277 NA other upstream 9813 6686351 ~ 6691799 (+)
G96420 NA other upstream 1236178 5426879 ~ 5465434 (+)
G96415 NA other upstream 1309889 5388937 ~ 5391723 (+)
AMCG00015215 NA other upstream 1582211 5084574 ~ 5119401 (+)
AMCG00015212 NA other upstream 1623709 5068047 ~ 5077903 (+)
AMCG00015293 NA other downstream 294503 6997597 ~ 7080788 (+)
G97006 NA other downstream 712275 7415369 ~ 7415762 (+)
AMCG00015324 esrra,LOC107669367,LOC107715365,LOC104926321,LOC106534575 other downstream 1243114 7946208 ~ 7956114 (+)
AMCG00015334 NA other downstream 1371087 8074181 ~ 8078832 (+)
AMCG00015343 gng3,LOC107559409 other downstream 1421212 8124306 ~ 8126457 (+)

Expression


Co-expression Network