G96994


Basic Information

Item Value
gene id G96994
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 7362385 ~ 7364999 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU120944
CAAACgttttttattacaagcagctgcatggAAGAGGTTTGAAAGGCGAtttcaagaacagtcttagaaaaCATACAAAGTAAAGGCACTTTTATGGTGaccaggcccacatgtctgtcccagcATGAGTGGAAatttggtttctgcctgacaactcatTAGGGAAACCCATATATTGCTAAACcagggaaaataaaagcatatgtaatgtttaatataaggggggtttgtacgatgtaccAAGCCCagattgctggtgaaaactggttcttatcagaccctgttcttctagatATCAGGGTTGgactatagcacagtacagtagcATAGTGAGACAGTGAGgcagtgaccttgttcacacaaacacacagggaaagaaatgcagttcttcataGTCCATAAGAAAGAGGATGGCGCAGCCTGGTCCATGGTTCAAACGACATTTGTAGCACAAGACGGAGACAGCGACAGCAGAGCCAACAACGATTGTGAGTCTAACACAAGCAAAGTCAGTGCAACACCTGCAGCTGAAGCGGTAGGCAATGGGGAGCCAGGGCtgggagggagacagacaatACTACATCAATATGTCAGttttacagagtgtgtgtgtgtgttgtggagCATTAGACAATAGTACTGCATTAGTGTACAACAATAGCAGTGATGCAGCTGCTGGTGGTATTACAGGCTGGTGTGAGGTTGGTGGAGTGTGAGGAGGCAAACTCACTCCTCACGGAGCCAGCTTAGATGTTTCTTTTTGATAAGGGCAATCTGTAACTTTATTAAGTTTTTAGTTATGTTAAGATCTTTATTAAATCCTGTACAAACCTTGTTTTGTTGGGATTACGGGAGTGatatgcatgtctgtgtgtacaGCCACTTTGGTTGTATTAAAGGGGTGCGGGTCACCAATGGTTTGGTATTTAAAGGGGGGGGCAAGAGCAAGTTTATCTGTGGGGGGAGTAGATCGATGAACAGTGGAATCTGGGTTATtggggttatttatttatttatttatttatttactttttattgtttgagGAATTTTATGGAAAACACAAAGTTACGTTGTGGGTTTaggttgattttattttattgttagttttacATAAAAGTTTTCATTGTTGGTTTAAAGTGTGGGAGGAGTCAGCCTGCCAGCACCAATATAAGGGTGCTGGATGCTTCAGTAGAGAGACGTTGCCCTGTACATATACTACCCTGGTTTCTGAAGTATGTGGCTGTTTAGTTGATGgtattttcagttacatttagCTTTTAGTTACAGAGAGTCCAGagcttattttattcttttgttttgtatagtttatttGGACTTATTTTTGTTGACTGTGATTTTTGGCTTTCTGCTTGAACACCGACCTATTTTggaataaacttgtttttttggCACTACTCCTTTGTGTTCCTACAACTTTGTCACTCCCCTATCAAGCAGCTGGGAGGCCAGATGTGGTGGGCTGGTCTACTTgaaaagtcattttttatttccagtctGTCACTGAATTACGGAGGTGTGTTTTCTTAAAAGCAGATGATTGTGCATTTTTAGTTTCTGATCAAGCCAGGCATTCatacaggaaatgaaaaaaaaaaagcatcagtTCCAGGAATTTTGAAAAAATCCCCTGATAACAAACCAATTGTAAATGCTTGTGTCACAAATTGAGAAGGTTATGCCAAATGTATATTctatttatagaatatatagTGGTATAtaggatacatttaaaaattgtagcAGTGTGCCATGGGTGGTCATATAGCATGGGAGCACTGCACACCGCTCTGAAACAATCTATCAACAGTCAAGCTTGTCCTTATAGCCTTCTTTTGAAAGGTAATAAAAgcagcaaaactaaaaaaaaagttgaatccCTTAATATCTGTGATGTTCAAGGTTCCTAGAAATACGTTTGccacagaaaaacactgaatttttCGGGTTAGCAGAgaatttaattttcctttctttatatatatttaatctacaaactacataaataaatgcatgtacaATGCAAGCATTGTACACAAACTGTCCTATTGTGATCAGGGCGCTTTTTCCCCAAAGGAAACAGAGGACAGTTTGCTCTtttgctgaaatattaaaatgtagccttTTTATAATTTGAAGGATATTCTGGTTAAGAATAGGTCTACTACATTTGATTTGAATCGTGGAAAACTAGGAACCTTGTTGATGGGAGGACTGCTTCAGTCGTCCTGTACACTTTGGAATGGAGCCTTTCCCTTTCTCTACTCTCGTTTACTCCTGCACTGAAACAATAGGACCTTTCTCACTGGTCTATATAAGCCAGGccaaatgaaaactacaactgTAATGCAGAAGCAACAAATAAAAGTAGGGGGGGGTGGATTTAGAGGCACTTCAACAGCTAAAATCTCTTCCTTTTCACTCCTGTGGTTGGATCCCCTGTGCTGCGCTGTTCCCAGGGTGCTCTCCATTGAGGTTCTGCAACGGATGT
>TU120947
CAAACgttttttattacaagcagctgcatggAAGAGGTTTGAAAGGCGAtttcaagaacagtcttagaaaaCATACAAAGTAAAGGCACTTTTATGGTGaccaggcccacatgtctgtcccagcATGAGTGGAAatttggtttctgcctgacaactcatTAGGGAAACCCATATATTGCTAAACcagggaaaataaaagcatatgtaatgtttaatataaggggggtttgtacgatgtaccAAGCCCagattgctggtgaaaactggttcttatcagaccctgttcttctagatATCAGGGTTGgactatagcacagtacagtagcATAGTGAGACAGTGAGgcagtgaccttgttcacacaaacacacagggaaagaaatgcagttcttcataGTCCATAAGAAAGAGGATGGCGCAGCCTGGTCCATGGTTCAAACGACATTTGTAGCACAAGACGGAGACAGCGACAGCAGAGCCAACAACGATTGTGAGTCTAACACAAGCAAAGTCAGTGCAACACCTGCAGCTGAAGCGGTAGGCAATGGGGAGCCAGGGCtgggagggagacagacaatACTACATCAATATGTCAGttttacagagtgtgtgtgtgtgttgtggagCATTAGACAATAGTACTGCATTAGTGTACAACAATAGCAGTGATGCAGCTGCTGGTGGTATTACAGGCTGGTGTGAGGTTGGTGGAGTGTGAGGAGGCAAACTCACTCCTCACGGAGCCAGCTTAGATGTTTCTTTTTGATAAGGGCAATCTGTAACTTTATTAAGTTTTTAGTTATGTTAAGATCTTTATTAAATCCTGTACAAACCTTGTTTTGTTGGGATTACGGGAGTGatatgcatgtctgtgtgtacaGCCACTTTGGTTGTATTAAAGGGGTGCGGGTCACCAATGGTTTGGTATTTAAAGGGGGGGGCAAGAGCAAGTTTATCTGTGGGGGGAGTAGATCGATGAACAGTGGAATCTGGGTTATtggggttatttatttatttatttatttatttactttttattgtttgagGAATTTTATGGAAAACACAAAGTTACGTTGTGGGTTTaggttgattttattttattgttagttttacATAAAAGTTTTCATTGTTGGTTTAAAGTGTGGGAGGAGTCAGCCTGCCAGCACCAATATAAGGGTGCTGGATGCTTCAGTAGAGAGACGTTGCCCTGTACATATACTACCCTGGTTTCTGAAGTATGTGGCTGTTTAGTTGATGgtattttcagttacatttagCTTTTAGTTACAGAGAGTCCAGagcttattttattcttttgttttgtatagtttatttGGACTTATTTTTGTTGACTGTGATTTTTGGCTTTCTGCTTGAACACCGACCTATTTTggaataaacttgtttttttggCACTACTCCTTTGTGTTCCTACAACTTTGTCACTCCCCTATCAAGCAGCTGGGAGGCCAGATGTGGTGGGCTGGTCTACTTgaaaagtcattttttatttccagtctGTCACTGAATTACGGAGGTGTGTTTTCTTAAAAGCAGATGATTGTGCATTTTTAGTTTCTGATCAAGCCAGGCATTCatacaggaaatgaaaaaaaaaaagcatcagtTCCAGGAATTTTGAAAAAATCCCCTGATAACAAACCAATTGTAAATGCTTGTGTCACAAATTGAGAAGGTTATGCCAAATGTATATTctatttatagaatatatagTGGTATAtaggatacatttaaaaattgtagcAGTGTGCCATGGGTGGTCATATAGCATGGGAGCACTGCACACCGCTCTGAAACAATCTATCAACAGTCAAGCTTGTCCTTATAGCCTTCTTTTGAAAGGTAATAAAAgcagcaaaactaaaaaaaaagttgaatccCTTAATATCTGTGATGTTCAAGGTTCCTAGAAATACGTTTGccacagaaaaacactgaatttttCGGGTTAGCAGAgaatttaattttcctttctttatatatatttaatctacaaactacataaataaatgcatgtacaATGCAAGCATTGTACACAAACTGTCCTATTGTGATCAGGGCGCTTTTTCCCCAAAGGAAACAGAGGACAGTTTGCTCTtttgctgaaatattaaaatgtagccttTTTATAATTTGAAGGATATTCTGGTTAAGAATAGGTCTACTACATTTGATTTGAATCGTGGAAAACTAGGAACCTTGTTGATGGGAGGACTGCTTCAGTCGTCCTGTACACTTTGGAATGGAGCCTTTCCCTTTCTCTACTCTCGTTTACTCCTGCACTGAAACAATAGGACCTTTCTCACTGGTCTATATAAGCCAGGccaaatgaaaactacaactgTAATGCAGAAGCAACAAATAAAAGTAGGGGGGGGTGGATTTAGAGGCACTTCAACAGCTAAAATCTCTTCCTTTTCACTCCTGTGGTTGGATCCCCTGTGCTGCGCTGTTCCCAGGGTGCTCTCCATTGAGGTTCTGCAACGGATGTGTCTCTGGCCTAGATAGAAGAGGTACATAAGCATTCACTATcattgctgtatatatatatatatatatatatatatatatatatatatacaggtctggaaaaatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU120944 False 2510 lncRNA 0.40 1 7362490 7364999
TU120947 True 2615 lncRNA 0.39 1 7362385 7364999

Neighbor

gene id symbol gene type direction distance location
AMCG00015303 NA coding downstream 64800 7294862 ~ 7297585 (-)
AMCG00015300 NA coding downstream 130449 7231442 ~ 7231936 (-)
AMCG00015299 psmc4,prs6b,LOC107719110,LOC106605234 coding downstream 138440 7217276 ~ 7223945 (-)
AMCG00015301 NA coding downstream 149008 7127305 ~ 7213377 (-)
AMCG00015296 NA coding downstream 262377 7085696 ~ 7100008 (-)
AMCG00015304 NA coding upstream 21860 7386859 ~ 7389560 (-)
AMCG00015313 NA coding upstream 342911 7707910 ~ 7710268 (-)
AMCG00015314 NA coding upstream 383343 7748342 ~ 7757219 (-)
AMCG00015320 LOC107707189 coding upstream 456195 7821194 ~ 7825760 (-)
AMCG00015321 mrps12 coding upstream 461682 7826681 ~ 7828114 (-)
G96988 NA non-coding downstream 11600 7350509 ~ 7350785 (-)
G96984 NA non-coding downstream 25158 7336015 ~ 7337227 (-)
G96967 NA non-coding downstream 85012 7272911 ~ 7277373 (-)
G96873 NA non-coding downstream 298448 6987400 ~ 7063937 (-)
G96696 NA non-coding downstream 999976 6355020 ~ 6362409 (-)
G97041 NA non-coding upstream 132943 7497942 ~ 7619517 (-)
G97121 NA non-coding upstream 415393 7780392 ~ 7780598 (-)
G97130 NA non-coding upstream 449895 7814894 ~ 7815402 (-)
G97134 NA non-coding upstream 454805 7819804 ~ 7820189 (-)
G97221 NA non-coding upstream 604598 7969597 ~ 7970757 (-)
AMCG00015288 NA other downstream 438671 6917679 ~ 6923714 (-)
AMCG00015285 NA other downstream 465958 6891235 ~ 6896427 (-)
AMCG00015283 NA other downstream 484651 6870462 ~ 6877734 (-)
G96766 NA other downstream 662028 6698857 ~ 6700357 (-)
AMCG00015271 NA other downstream 942904 6410647 ~ 6419481 (-)
AMCG00015305 NA other upstream 25890 7390889 ~ 7448294 (-)
G97125 NA other upstream 421088 7786087 ~ 7786442 (-)
AMCG00015333 nxf1,LOC105897453,LOC108417053,LOC106603139 other upstream 705036 8070035 ~ 8091826 (-)
G97411 NA other upstream 766308 8131307 ~ 8134115 (-)
AMCG00015348 ehd1b,LOC107718765,LOC107720605,LOC106603140,LOC107548869,LOC106930329,LOC103471421,LOC103136898 other upstream 858200 8223199 ~ 8283629 (-)

Expression


Co-expression Network