G97265 (cfl1,LOC105028071,LOC106604708,LOC106611761)


Basic Information

Item Value
gene id G97265
gene name cfl1,LOC105028071,LOC106604708,LOC106611761
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8096386 ~ 8173011 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU121262
GGGTGCCTTTCACCATTCCCTCCCCCCACAGAGTGAAGGAGTCCAAAGTGTGTGTGGAAATTTTAGTGCTTTATTAGATTTTACCAGACCGTACAAAACACAGGAGTGTatgaaagagaggggggggcagCAATATCCCAAGTCTAACTCCCCATCCCTTCACTGACATGTCTCTTTCCACcacccctcggcctcctcctccacctACTCTCCCTGTAAAGGAATGCTCACTTAAGTAGCccataacatttgaaaaatgtcaaagtggaaaattaaaaaaaaaaaaaaaaaaaatggtctcAATCtattgatattttgtattaccaCTGTTATCCTTCCATCATTGTGAAACCCACTACAGCAGCTGAGAGCTGCTTAGAGctacagcacaaaacaaaaacactaataaaagaaaaaaaattatggaaatgttattttggcaaaataataataataataataaaaaaaaaaaagtattgtttagAATTGAAGCTGTTCCCCTATAACACCCCCTCCCTCATGTCCACTCAGGAATTGTTCACCCAGGTCTAGGTTGGTTCCCCACATTGGATTCAGACAAACTGTAGCCAGGAAAAGCAGGAAGGTGACAGATTCCATTAGaactttaatttttattttttaatttccttcatttgctttagttttttttttttttttttgtgttttttattttttatttaatttatagatTAATTTTTTTTGATGAAACTGAACAGTGTGGAGGATACCATActtttaccccccccccccccccccccccccccccccccccccccccccccacccaaccctACCCTACCCTACCCTTTCTAACCCAGCCTCCCCCACATCTCTCCCCTCTTCTCCCTCGGAATGAACAGTCGGGGCCTGCAGTAAGTGGAGGCCTCGGTGAAGCCTGGGACTACATTTACAAGGGGCTCCCCTCCAGGGTGATAACTGACTGGCCGCCCAGCTTCTCAGCCAGGGTGCGTCGGTCCTTGATGTCCTCCAAACCGTTTACCTGCCACTCGTGCTTGATGcctgGAACTTTTTCTTGATGGCATCCTTGGAGCTGGCGTAGATCATCTTGCTCTTCAGGGGGGCATTCTCGGGGGCCCTGAGATAAGAGACAGACCGTCACTATGAACTCTAATGACATGCTGTGGTATCAGGGACAAGCATCCTGCATAACACCTCCCACCCATGGCTCTCTTCCCaattcctctctccctcaccagAAGATGAATACTAGGTCCTCCTTCTTGCTCTCCTTAGTCTCGTACGTGGCGTCGTACAGGGCGTAGCGGCAGTCATTGGGTGGCAGCATTTTGACGAAGTGCAGATAGGGGTCATCCACTGTGTTGCCCACGTCGCCCAGCAGGATCTCCTTGCCCTCCTCCAGCACGATGTTCTTCATGTCCTGGCTCAGGCAAAACAGCACGGCCTTCTTACGCTTCTTCTTGTCGTCCTCGCACACCTGCGCCTTCCGCACCTTCATCTCGTTGAACACGGTGATGACATTGTCTGCCACGGTCACGCCGGAGGCCTGGGGGACACCAAGAGGAGGGCAGAGGGTTAGAGGGGGGGAgtatgagagggagagaggtcaGAAGGGCTTCAATGCAGCgaggggggtgggtggggtggaTGG
>TU121264
ttttttttttttttttttttttttttttttgtgttttttattttttatttaatttatagatTAATTTTTTTTGATGAAACTGAACAGTGTGGAGGATACCATActtttaccccccccccccccccccccccccccccccccccccccccccccacccaaccctACCCTACCCTACCCTTTCTAACCCAGCCTCCCCCACATCTCTCCCCTCTTCTCCCTCGGAATGAACAGTCGGGGCCTGCAGTAAGTGGAGGCCTCGGTGAAGCCTGGGACTACATTTACAAGGGGCTCCCCTCCAGGGTGATAACTGACTGGCCGCCCAGCTTCTCAGCCAGGGTGCGTCGGTCCTTGATGTCCTCCAAACCGTTTACCTGCCACTCGTGCTTGATGcctggaggagggggagagagagaagtttaaaatgcatcactGCAGTATTTAATCGCTCCCATTGACCCATCCCAGAGCACTGGAGcaagctttttttcctttttgaatgaAAGGCATTAATTGCACAGACTTGCAGGCCTGAGACCTCAATATCACCAAGCAGGGACCCCCAGCCAGCCCACCCTGCAGGGGAGGAGGCAACAACAGCAGAGAGGGGCAGACAGAGGCCCTGGAGACCCATGTCTGCTGTTTGAATACAAGtacccaaatacaaactttaCAGTCTTCAGTGTGTAAGTGGCTGTTACAGCTTGTTCCAAGGAAAAGTGATGGCACCCCAATAAAGGACAGGAGTCTCACCTGTGAACTTTTTCTTGATGGCATCCTTGGAGCTGGCGTAGATCATCTTGCTCTTCAGGGGGGCATTCTCGGGGGCCCTGAGATAAGAGACAGACCGTCACTATGAACTCTAATGACATGCTGTGGTATCAGGGACAAGCATCCTGCATAACACCTCCCACCCATGGCTCTCTTCCCaattcctctctccctcaccagAAGATGAATACTAGGTCCTCCTTCTTGCTCTCCTTAGTCTCGTACGTGGCGTCGTACAGGGCGTAGCGGCAGTCATTGGGTGGCAGCATTTTGACGAAGTGCAGATAGGGGTCATCCACTGTGTTGCCCACGTCGCCCAGCAGGATCTCCTTGCCCTCCTCCAGCACGATGTTCTTCATGTCCTGGCTCAGGCAAAACAGCACGGCCTTCTTACGCTTCTTCTTGTCGTCCTCGCACACCTGCGCCTTCCGCACCTTCATCTCGTTGAACACGGTGATGACATTGTCTGCCACGGTCACGCCGGAGGCCTTTCTGCGGTGGTCGCGGAGTACAGGAGTGCAGGCGAGGCAGCAGCGCGTCGGTCGGTCGGTGCAGAGTCGCAGTCTGGCTCCTCCGCCCTGAATATATCGCACTGCGCGCCGCGCGCCCCCACTGGCGCCGGGAGCGTCCGGCATCCGGGGCCTGCGCGGGCTCCTCCCCCCGCCGCGCGGCAGCCTGGGGGTTGTAgtggatggggggggggtggcgcGGATCCCTGTGGATTCTTGAACCTTATGGGACCTAGAAAGACCTCCTCCTCCGAGATCCTCCGAtattagtttatattttatatgatttttataTCACACACTGTCGTCAAGCTGTGGGGGACATGAGGGAGA
>TU121266
GGGTGCCTTTCACCATTCCCTCCCCCCACAGAGTGAAGGAGTCCAAAGTGTGTGTGGAAATTTTAGTGCTTTATTAGATTTTACCAGACCGTACAAAACACAGGAGTGTatgaaagagaggggggggcagCAATATCCCAAGTCTAACTCCCCATCCCTTCACTGACATGTCTCTTTCCACcacccctcggcctcctcctccacctACTCTCCCTGTAAAGGAATGCTCACTTAAGTAGCccataacatttgaaaaatgtcaaagtggaaaattaaaaaaaaaaaaaaaaaaaatggtctcAATCtattgatattttgtattaccaCTGTTATCCTTCCATCATTGTGAAACCCACTACAGCAGCTGAGAGCTGCTTAGAGctacagcacaaaacaaaaacactaataaaagaaaaaaaattatggaaatgttattttggcaaaataataataataataataaaaaaaaaaaagtattgtttagAATTGAAGCTGTTCCCCTATAACACCCCCTCCCTCATGTCCACTCAGGAATTGTTCACCCAGGTCTAGGTTGGTTCCCCACATTGGATTCAGACAAACTGTAGCCAGGAAAAGCAGGAAGGTGACAGATTCCATTAGaactttaatttttattttttattttttaatttc

Function

symbol description
cfl1 Predicted to enable actin filament binding activity. Acts upstream of or within several processes, including cilium assembly; determination of heart left/right asymmetry; and gastrulation. Predicted to be located in membrane and nucleus. Predicted to be active in actin cortical patch. Is expressed in several structures, including DEL; blastomere; digestive system; nervous system; and renal system. Orthologous to human CFL1 (cofilin 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU121262 True 1651 lncRNA 0.49 2 8165577 8167587
TU121264 False 1610 lncRNA 0.55 3 8096386 8173011
TU121266 False 654 lncRNA 0.38 2 8165577 8167771

Neighbor

gene id symbol gene type direction distance location
AMCG00015325 LOC106603145 coding upstream 125703 7964647 ~ 7970683 (+)
AMCG00015323 ccdc85b,LOC102791751 coding upstream 194666 7901121 ~ 7901720 (+)
AMCG00015316 NA coding upstream 247383 7845592 ~ 7849003 (+)
AMCG00015322 NA coding upstream 261223 7830597 ~ 7835163 (+)
AMCG00015317 NA coding upstream 301431 7784533 ~ 7794955 (+)
AMCG00015344 ehd1b,LOC107720605,LOC107548869,LOC107718765,LOC107701170,LOC107555151 coding downstream 42004 8215015 ~ 8224773 (+)
AMCG00015346 NA coding downstream 86162 8259173 ~ 8264168 (+)
AMCG00015357 NA coding downstream 199455 8372466 ~ 8381177 (+)
AMCG00015364 NA coding downstream 260472 8433483 ~ 8443894 (+)
AMCG00015369 sart1,LOC107568296 coding downstream 341702 8514713 ~ 8524559 (+)
G97206 NA non-coding upstream 41559 8051523 ~ 8054827 (+)
G97184 NA non-coding upstream 134298 7958655 ~ 7962088 (+)
G97172 NA non-coding upstream 165364 7920405 ~ 7931022 (+)
G97160 NA non-coding upstream 199009 7896205 ~ 7897377 (+)
G97157 NA non-coding upstream 203599 7888609 ~ 7892787 (+)
G97347 NA non-coding downstream 69766 8242777 ~ 8244987 (+)
G97350 NA non-coding downstream 75100 8248111 ~ 8250285 (+)
G97383 NA non-coding downstream 304211 8477222 ~ 8480537 (+)
G97543 NA non-coding downstream 440244 8613255 ~ 8616320 (+)
G97547 NA non-coding downstream 451078 8624089 ~ 8624687 (+)
AMCG00015334 NA other upstream 17554 8074181 ~ 8078832 (+)
AMCG00015324 esrra,LOC107669367,LOC107715365,LOC104926321,LOC106534575 other upstream 140272 7946208 ~ 7956114 (+)
G97006 NA other upstream 680624 7415369 ~ 7415762 (+)
AMCG00015293 NA other upstream 1015598 6997597 ~ 7080788 (+)
AMCG00015277 NA other upstream 1404587 6686351 ~ 6691799 (+)
AMCG00015345 NA other downstream 24061 8197072 ~ 8201857 (+)
G97343 NA other downstream 60413 8233424 ~ 8294330 (+)
AMCG00015356 NA other downstream 115959 8288970 ~ 8293681 (+)
AMCG00015358 NA other downstream 122076 8295087 ~ 8303048 (+)
AMCG00015362 NA other downstream 130374 8303385 ~ 8305677 (+)

Expression


Co-expression Network