G97543


Basic Information

Item Value
gene id G97543
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8613255 ~ 8616320 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU121616
CTCAAGTTCAGCTGCTTTATTAAACATTGTATCATAAAAGTGTAACAAACAGGGGGAAAAGTATTGCTAAGTATACCtggttctttattttattttttatgaccCAGTGTCCTGCAAAATTTGGCATTAAGAGAAgaggagggatggggggggttACAGTTCCTATGGCAATCAgacccctctctccccatctccttCCCTCCCCCAACTCTCCCCTCCTCTTGCCAAAAAGTGTCAGTCTCCATCCAGCAGTGTTGACACTGGGTAGACCGCCATCACTTGCCAGATACTGTccgtcaatgtttttttttttttgttttgttttttttttagtgattTTTCTAAGCTCTGCTTGGAAAGAGGCAGAGGAACAGTCTGCCGTATAGTGTCTCTCTTTAGATCTCGTCGCATTCCCGAAAAAATCCCAAATCCGtgacaaataaaaaagctgcaattccaaaaaaaacaaaatacattaaaaccacCTGTAAcatttaccattattattattccacgCATGTTCTAACTGTTCTGTTTAACCAGCCCCCAAAAAGGCAAAAATACCTGAAgcagaacaatacaaaacatgtcTAATGTATTTTCCTTGGCTCTTACTAGATGGTTTCCTGAAGCCATGACCGTAATCACATTGTTTCAGATGAAGGCTGAGAATAAACTGACTGTTTTCATGCACTGTAGATGTTCTACTGTTAACTTAGTAGATCAATCacatataacaataaaaatccTAGAAAACAGACCTGGAAGAACATCACAACCCACACCCCTCCCAGACTTGCACTGTCACAcagatctgtgtgtttgtgtgtacaggGTGTAATTAGCTAAAGGCCTGAGCgctgcccccacccccctgggACTGCAACCTAGGTAGCACCCCCACCAGACAGCGCTGCCTTGGTAGCACCAGCCCCCACCATCCAatggggtttttgttttgttcgtgacagtgttttttattacatCAGCCTTTAGGTTCAGAGCCCCATTGCGGCTTTATAGTTACGCACTTGTGGCTGTCTGTCAGTCGCTccctattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatctctgcaTGTGCACCTTGGTGACCCTGCCCCTGTATACGTCTCCGTCTTTGTCAGTGTGCGCGTGTCTGTATCCCTGCTGTGTGGTGTCCGGGTGGggaggggtcaggggtcacttCTTCTGCGGCGTGCTGAGCTTCTGCATCCCCCGAATCTTGTCCAGCAACTCTGTCACAAAGTC

Function

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0015849 organic acid transport biological_process
GO:1905039 carboxylic acid transmembrane transport biological_process
GO:0098656 anion transmembrane transport biological_process
GO:0046942 carboxylic acid transport biological_process
GO:1903825 organic acid transmembrane transport biological_process
GO:0015711 organic anion transport biological_process
GO:1990542 mitochondrial transmembrane transport biological_process
GO:0015718 monocarboxylic acid transport biological_process
GO:0006839 mitochondrial transport biological_process
GO:0006848 pyruvate transport biological_process
GO:0006850 mitochondrial pyruvate transmembrane transport biological_process
GO:1901475 pyruvate transmembrane transport biological_process
GO:0005746 mitochondrial respirasome cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0070469 respirasome cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0009055 electron transfer activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04260 Cardiac muscle contraction
ko04723 Retrograde endocannabinoid signaling
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU121616 True 1271 lncRNA 0.45 2 8613255 8616320

Neighbor

gene id symbol gene type direction distance location
AMCG00015377 fkbp2,LOC106603154 coding upstream 391 8608850 ~ 8612864 (+)
AMCG00015378 LOC105028067,LOC106563498,LOC106603157,LOC108412801,LOC108278882 coding upstream 16642 8591916 ~ 8596613 (+)
AMCG00015370 LOC102776143 coding upstream 41190 8552798 ~ 8572065 (+)
AMCG00015369 sart1,LOC107568296 coding upstream 88696 8514713 ~ 8524559 (+)
AMCG00015364 NA coding upstream 169361 8433483 ~ 8443894 (+)
AMCG00015376 NA coding downstream 11451 8627771 ~ 8655109 (+)
AMCG00015381 NA coding downstream 113654 8729974 ~ 8731761 (+)
AMCG00015383 NA coding downstream 119641 8735961 ~ 8742485 (+)
AMCG00015382 NA coding downstream 132567 8748887 ~ 8753046 (+)
AMCG00015391 arl2 coding downstream 181913 8798233 ~ 8800278 (+)
G97383 NA non-coding upstream 132718 8477222 ~ 8480537 (+)
G97350 NA non-coding upstream 362970 8248111 ~ 8250285 (+)
G97347 NA non-coding upstream 368268 8242777 ~ 8244987 (+)
G97265 cfl1,LOC105028071,LOC106604708,LOC106611761 non-coding upstream 440244 8096386 ~ 8173011 (+)
G97547 NA non-coding downstream 7769 8624089 ~ 8624687 (+)
G97560 NA non-coding downstream 76108 8692428 ~ 8692642 (+)
G97588 NA non-coding downstream 102921 8719241 ~ 8719562 (+)
G97612 NA non-coding downstream 160897 8777217 ~ 8779046 (+)
G97618 NA non-coding downstream 167426 8783746 ~ 8783991 (+)
G97513 NA other upstream 68473 8543324 ~ 8544782 (+)
AMCG00015368 banf1,LOC108439777,LOC106523121 other upstream 79851 8529018 ~ 8533404 (+)
AMCG00015365 naa40,LOC107750594,LOC107691908,LOC107749810 other upstream 180163 8342493 ~ 8433092 (+)
AMCG00015363 NA other upstream 201374 8382669 ~ 8411881 (+)
AMCG00015359 NA other upstream 301056 8307580 ~ 8312199 (+)
G97558 LOC107567908,LOC108428058,LOC107715375,LOC107568312,LOC108278532 other downstream 70448 8686768 ~ 8687680 (+)
AMCG00015412 NA other downstream 180751 8797071 ~ 9124271 (+)
AMCG00015397 NA other downstream 212416 8828736 ~ 8893016 (+)
AMCG00015390 NA other downstream 260972 8877292 ~ 8884897 (+)
AMCG00015396 NA other downstream 335416 8951736 ~ 8953684 (+)

Expression


Co-expression Network