G97588


Basic Information

Item Value
gene id G97588
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8719241 ~ 8719562 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU121670
CGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACGTCCCCTATATGGGGACCatatattaaattgatttttggCGCAGGGAGATGGGATAGGGGCTTGCTCCGCCCACTCCACGCATCGGCCTGGTATTGCAGTGTCTCCAGGAACGGTGCACCCCCCGGGGAACGAGCTGGTTTAACGACAGACTGACAGCGGGACAGAGGAGAGGGCTGCCCTCAATTCagctttttaattgtgtttctcAAAATGCTCATTTTTGCGGAATCTGTCTGTTTAACAAGCAGGATCTNNN

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0009987 cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005840 ribosome cellular_component
GO:0015935 small ribosomal subunit cellular_component

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU121670 True 322 lncRNA 0.48 1 8719241 8719562

Neighbor

gene id symbol gene type direction distance location
AMCG00015376 NA coding upstream 64132 8627771 ~ 8655109 (+)
AMCG00015377 fkbp2,LOC106603154 coding upstream 106377 8608850 ~ 8612864 (+)
AMCG00015378 LOC105028067,LOC106563498,LOC106603157,LOC108412801,LOC108278882 coding upstream 122628 8591916 ~ 8596613 (+)
AMCG00015370 LOC102776143 coding upstream 147176 8552798 ~ 8572065 (+)
AMCG00015369 sart1,LOC107568296 coding upstream 194682 8514713 ~ 8524559 (+)
AMCG00015381 NA coding downstream 10412 8729974 ~ 8731761 (+)
AMCG00015383 NA coding downstream 16399 8735961 ~ 8742485 (+)
AMCG00015382 NA coding downstream 29325 8748887 ~ 8753046 (+)
AMCG00015391 arl2 coding downstream 78671 8798233 ~ 8800278 (+)
AMCG00015389 LOC102775858 coding downstream 82865 8802427 ~ 8809201 (+)
G97560 NA non-coding upstream 26599 8692428 ~ 8692642 (+)
G97547 NA non-coding upstream 94554 8624089 ~ 8624687 (+)
G97543 NA non-coding upstream 102921 8613255 ~ 8616320 (+)
G97383 NA non-coding upstream 238704 8477222 ~ 8480537 (+)
G97350 NA non-coding upstream 468956 8248111 ~ 8250285 (+)
G97612 NA non-coding downstream 57655 8777217 ~ 8779046 (+)
G97618 NA non-coding downstream 64184 8783746 ~ 8783991 (+)
G97619 NA non-coding downstream 64650 8784212 ~ 8785276 (+)
G97620 NA non-coding downstream 69998 8789560 ~ 8790667 (+)
G97640 NA non-coding downstream 192452 8912014 ~ 8964118 (+)
G97558 LOC107567908,LOC108428058,LOC107715375,LOC107568312,LOC108278532 other upstream 31561 8686768 ~ 8687680 (+)
G97513 NA other upstream 174459 8543324 ~ 8544782 (+)
AMCG00015368 banf1,LOC108439777,LOC106523121 other upstream 185837 8529018 ~ 8533404 (+)
AMCG00015365 naa40,LOC107750594,LOC107691908,LOC107749810 other upstream 286149 8342493 ~ 8433092 (+)
AMCG00015412 NA other downstream 77509 8797071 ~ 9124271 (+)
AMCG00015397 NA other downstream 109174 8828736 ~ 8893016 (+)
AMCG00015390 NA other downstream 157730 8877292 ~ 8884897 (+)
AMCG00015396 NA other downstream 232174 8951736 ~ 8953684 (+)
AMCG00015398 NA other downstream 251904 8971466 ~ 8978004 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006552 CR932438.2 non-coding NC_007124.7 CM002897.2 18649492 ~ 18649682 (-)
grasscarp (Ctenopharyngodon idella) G176357 NA non-coding CI01000037 null 2852378 ~ 2852726 (+)
mexican tetra (Astyanax mexicanus) G148052 NA non-coding NC_035912.1 CM008315.1 40629471 ~ 40629687 (-)