G97620


Basic Information

Item Value
gene id G97620
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8789560 ~ 8790667 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU121722
CTCGGACTGGCTTCGGGGGAACATACGATGAGACACTCAGCAAACTTGTGGAGAAGGAGCTTTTATTGCAACAGGAATCGAAGTCAGGAGGCTGCAGAGGTGTTTAGGCTACACAGACGCACGCACAAACACGCACGCAGGCACGCACATGTGTGTCAAGGTATGCGTGGACATGGGTGCGTCTCGTACGCGTGTCACTAACGAAGGAAAACAACGTGACGCCACCAGGAGAGTGTTACAGAATGCGGTGTTTTATTAAGGCGGAGATGGAGGACAGCGGCTTCATGACAGAGGAGGTTAAAAAAAGACttcctggtttaaaaaaaacaaaacataaacaaacccaAACCAAAGCGAATGCCTTACTTCTCAAACTAAGAACCAATTGGAACACATAAAGTGGgattatttaactttaaacaaGAGCAcacagattattaaaaaaaaaataaaaaaaaaaattaaattaaaaataaaatcggGTTCGATCTGACAATCCGGGAGAGGAAGACTACGTTTTGAAAAGTGAAACCAaagaatttttaaaaacaaatcacatgtatgtatatttatgtataattatatttatatctcTATATGAAGAGTGAAGCAGTGAGAGGAGCTTTACAAGTCGAGCAGAAACAGGGAGGTTACAGAGCAGCGCAGAGCAACTTGATACAGCGACGACAACCCAgactattaataaaaaaacaaaattaaaatcagaatcATCGTGATCATTCAACCAACCAAAGCCCTAGCACAAGGATTCACCCCTCCCAGCTTCAGAACAAACGAGCGTCTCAGaaaaatggaggaaaaaaataaattaaagaaatcaGTGTCGGCTTAAAAAGAATGATTATAATCAGGAGAAATACTCCTCATcaacatcaccatcatcatcagtgTTGATTCCTTTATAACATTCCGGCCTGTTAAATCcgagtgacagacagacaaaccagCAGCAGGAGCAAAATCGCGACGCAGGCGGGAGCACAAACTCCTGcgttttttaaggtttttttaagtttttttttttttaatgtttccgTTTTGGTTCGTGTCGGAGTGGTGGGCTGGACCGTCCTATGGGTCACTGCAA
>TU121726
ACGCACGCAGGCACGCACATGTGTGTCAAGGTATGCGTGGACATGGGTGCGTCTCGTACGCGTGTCACTAACGAAGGAAAACAACGTGACGCCACCAGGAGAGTGTTACAGAATGCGGTGTTTTATTAAGGCGGAGATGGAGGACAGCGGCTTCATGACAGAGGAGGTTAAAAAAAGACttcctggtttaaaaaaaacaaaacataaacaaacccaAACCAAAGCGAATGCCTTACTTCTCAAACTAAGAACCAATTGGAACACATAAAGTGGgattatttaactttaaacaaGAGCAcacagattattaaaaaaaaaataaaaaaaaaaattaaattaaaaataaaatcggGTTCGATCTGACAATCCGGGAGAGGAAGACTACGTTTTGAAAAGTGAAACCAaagaatttttaaaaacaaatcacatgtatgtatatttatgtataattatatttatatctcTATATGAAGAGTGAAGCAGTGAGAGGAGCTTTACAAGTCGAGCAGAAACAGGGAGGTTACAGAGCAGCGCAGAGCAACTTGATACAGCGACGACAACCCAgactattaataaaaaaacaaaattaaaatcagaatcATCGTGATCATTCAACCAACCAAAGCCCTAGCACAAGGATTCACCCCTCCCAGCTTCAGAACAAACGAGCGTCTCAGaaaaatggaggaaaaaaataaattaaagaaatcaGTGTCGGCTTAAAAAGAATGATTATAATCAGGAGAAATACTCCTCATcaacatcaccatcatcatcagtgTTGATTCCTTTATAACATTCCGGCCTGTTAAATCcgagtgacagacagacaaaccagCAGCAGGAGCAAAATCGCGACGCAGGCGGGAGCACAAACTCCTGcgttttttaaggtttttttaagtttttttttttttaatgtttccgTTTTGGTTCGTGTCGGAGTGGTGGGCTGGACCGTCCTATGGGTCACTGCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU121722 True 1108 lncRNA 0.41 1 8789560 8790667
TU121726 False 978 lncRNA 0.39 1 8789690 8790667

Neighbor

gene id symbol gene type direction distance location
AMCG00015382 NA coding upstream 36514 8748887 ~ 8753046 (+)
AMCG00015383 NA coding upstream 47075 8735961 ~ 8742485 (+)
AMCG00015381 NA coding upstream 57799 8729974 ~ 8731761 (+)
AMCG00015376 NA coding upstream 134451 8627771 ~ 8655109 (+)
AMCG00015377 fkbp2,LOC106603154 coding upstream 176696 8608850 ~ 8612864 (+)
AMCG00015391 arl2 coding downstream 7566 8798233 ~ 8800278 (+)
AMCG00015389 LOC102775858 coding downstream 11760 8802427 ~ 8809201 (+)
AMCG00015392 NA coding downstream 34845 8825512 ~ 8831714 (+)
AMCG00015395 NA coding downstream 135835 8926502 ~ 8929776 (+)
AMCG00015399 NA coding downstream 173793 8964460 ~ 8965650 (+)
G97619 NA non-coding upstream 4284 8784212 ~ 8785276 (+)
G97618 NA non-coding upstream 5569 8783746 ~ 8783991 (+)
G97612 NA non-coding upstream 10514 8777217 ~ 8779046 (+)
G97588 NA non-coding upstream 69998 8719241 ~ 8719562 (+)
G97560 NA non-coding upstream 96918 8692428 ~ 8692642 (+)
G97640 NA non-coding downstream 121347 8912014 ~ 8964118 (+)
G97650 NA non-coding downstream 151757 8942424 ~ 8950080 (+)
G97663 vps51 non-coding downstream 192835 8983502 ~ 8984908 (+)
G97676 NA non-coding downstream 233978 9024645 ~ 9030399 (+)
G97623 NA non-coding downstream 277276 9067943 ~ 9072295 (+)
G97558 LOC107567908,LOC108428058,LOC107715375,LOC107568312,LOC108278532 other upstream 101880 8686768 ~ 8687680 (+)
G97513 NA other upstream 244778 8543324 ~ 8544782 (+)
AMCG00015368 banf1,LOC108439777,LOC106523121 other upstream 256156 8529018 ~ 8533404 (+)
AMCG00015365 naa40,LOC107750594,LOC107691908,LOC107749810 other upstream 356468 8342493 ~ 8433092 (+)
AMCG00015412 NA other downstream 6404 8797071 ~ 9124271 (+)
AMCG00015397 NA other downstream 38069 8828736 ~ 8893016 (+)
AMCG00015390 NA other downstream 86625 8877292 ~ 8884897 (+)
AMCG00015396 NA other downstream 161069 8951736 ~ 8953684 (+)
AMCG00015398 NA other downstream 180799 8971466 ~ 8978004 (+)

Expression


Co-expression Network