G97663 (vps51)


Basic Information

Item Value
gene id G97663
gene name vps51
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8983502 ~ 8984908 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU121783
cctggacagTGCAGGGGAAGGGCCAAAGCGGCTGTGGGAACCATGCATGGAGGACTCAGTGAAGGAGACAGAAGGAATtaagatttttaaattttttaaatttattattttctcacttTACACTTTCTGCATAGGCAGCCCAGAGAGAAGGTGTTAAGCTCATGAAGTTAACCAGTCTCTcactgacctttgacctctctcACAGTTGACATCTCCCATTTCACCATAACCTCCAACCCCTCATGTTCACCCTCCACGAGCCCTAATCTCCCACCCCTGACCTTTGAACCCCCCTCTCACAGCTGGCATCTCTCCTCACTTGTACCCGCCGTGACCTCCGACCCCTCCGGAGCGCTTAGCCCCTCTCGCAGATGACCTCGATGACACTCTGCTCCATGGGGGCGGGGTCCAGGCAGCGGTGGGCGGAGCTGCCCACAATCTCGTCCAGCAGGAAGTGGACGAGGTTCTCGTCGGACACGAAGCGCCACAGGTACAGCTGCAGGTAGTGGCAATCCACCTGGATCTGCTGCAGCCCGTAGCGCCCGAACGTCCGCAGCCGCACACACTCCAGGAACGTCTTCAGGCTGATCTTAATGATCCCGGTCAGCACAGACACCTGCACCCAGTGGACCcttGTTGAACTCCACTGGGCTGAAGATGTCAATGCGCTCTGAGAACAGTTTCTGGATGTTACTCAGCAGGTTGGTGTCCATGGGGGCGCTGCGCAGGATGAGGGGGCggagagatagacagacagacagagagatagcAGTTGTGGTTGTGCAGCTGTGTCTGGAGGTGTAACAGGTGGCGTAGcggtgtgtgtgttgatgtgggttgtgtttttgttgtgtgtttgtgtatcagtgtgGCCGTGTTCTGTGTGGTTGTAGTTGTGTACCTAGGggtgtagctgtgtgtgtgtgtggttgtgtacCTGGGggtgtagctgtgtgtgtgtgtgtggttgtgtacCTGGGGGTGTAACTGGGTGCGTAGCGGGCGGGCTGCCGGGAGCTGCTGTACACAGAGAAGGTCCTCCTGCTGGAATCACTGCTGTGGGCCTTCCTCACCCCCTCCTCATACAGCATCCCCAC

Function

symbol description
vps51 Enables small GTPase binding activity. Acts upstream of or within several processes, including Golgi organization; lipid digestion; and regulation of phospholipase activity. Predicted to be located in recycling endosome. Predicted to be part of EARP complex and GARP complex. Predicted to be active in membrane. Is expressed in digestive system; head; heart; and trunk musculature. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia. Orthologous to human VPS51 (VPS51 subunit of GARP complex).

NR:

description
PREDICTED: vacuolar protein sorting-associated protein 51 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU121783 True 1097 lncRNA 0.56 2 8983502 8984908

Neighbor

gene id symbol gene type direction distance location
AMCG00015399 NA coding upstream 17852 8964460 ~ 8965650 (+)
AMCG00015395 NA coding upstream 53726 8926502 ~ 8929776 (+)
AMCG00015392 NA coding upstream 151788 8825512 ~ 8831714 (+)
AMCG00015389 LOC102775858 coding upstream 174301 8802427 ~ 8809201 (+)
AMCG00015391 arl2 coding upstream 183224 8798233 ~ 8800278 (+)
AMCG00015406 NA coding downstream 71865 9056773 ~ 9063476 (+)
AMCG00015413 NA coding downstream 143127 9128035 ~ 9138925 (+)
AMCG00015414 NA coding downstream 154296 9139204 ~ 9139449 (+)
AMCG00015416 NA coding downstream 170590 9155498 ~ 9175483 (+)
AMCG00015417 NA coding downstream 273274 9258182 ~ 9261673 (+)
G97640 NA non-coding upstream 19384 8912014 ~ 8964118 (+)
G97650 NA non-coding upstream 33422 8942424 ~ 8950080 (+)
G97620 NA non-coding upstream 192835 8789560 ~ 8790667 (+)
G97619 NA non-coding upstream 198226 8784212 ~ 8785276 (+)
G97618 NA non-coding upstream 199511 8783746 ~ 8783991 (+)
G97676 NA non-coding downstream 39737 9024645 ~ 9030399 (+)
G97623 NA non-coding downstream 83035 9067943 ~ 9072295 (+)
G97737 NA non-coding downstream 234928 9219836 ~ 9220284 (+)
G97741 sf3b2 non-coding downstream 237728 9222636 ~ 9223257 (+)
G97745 NA non-coding downstream 252925 9237833 ~ 9238342 (+)
AMCG00015398 NA other upstream 5498 8971466 ~ 8978004 (+)
AMCG00015396 NA other upstream 29818 8951736 ~ 8953684 (+)
AMCG00015397 NA other upstream 90486 8828736 ~ 8893016 (+)
AMCG00015390 NA other upstream 98605 8877292 ~ 8884897 (+)
G97558 LOC107567908,LOC108428058,LOC107715375,LOC107568312,LOC108278532 other upstream 295822 8686768 ~ 8687680 (+)
AMCG00015407 slc25a45 other downstream 44649 9029557 ~ 9036615 (+)
AMCG00015445 LOC102291110,LOC108440839,LOC107679294,LOC107731944,LOC102201806,LOC102799004,LOC108268318,LOC107558438,LOC570544 other downstream 639681 9624589 ~ 9631892 (+)
G98000 NA other downstream 721189 9706097 ~ 9710729 (+)
G98025 NA other downstream 772165 9757073 ~ 9760688 (+)
G98053 NA other downstream 830810 9815718 ~ 9872005 (+)

Expression


Co-expression Network