G97741 (sf3b2)


Basic Information

Item Value
gene id G97741
gene name sf3b2
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 9222636 ~ 9223257 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU121878
CTTCTTCTTGGACATCTTGGGAACGTCCGGCCGGGCTTCCTCATCGCTGTCATCGCtgtctttcttctcctcctcaaAGCCCTTCTTCTTCACCGCCATGGCCTCCAGCTTCTCTGCCTTCTCCGGctccttttccttctccttcttcacGTCATCCGTGAGCTTAAAGGCCTCGAAGATCCTCTTGAAGAAGATGAAGTTGGGGTCATAGATCTCAGGCTCCTCCGTGATGTATTCAATCTCCACTTCTGGCTCGCTCTCCTTGACCTtctccccctctgcctctccaTTCACCTCCCCCACCTTCTTCTCCTCCACCCCTGCCGCCTTGCcagtcttcttcttcttcttcttcctgttCCGGCGCTTGCGGCTTTT

Function

symbol description
sf3b2 Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be located in nucleus. Predicted to be part of U2 snRNP and spliceosomal complex. Is expressed in several structures, including mesenchyme; mesoderm; neural plate; neural rod; and tail bud. Orthologous to human SF3B2 (splicing factor 3b subunit 2).

NR:

description
PREDICTED: splicing factor 3B subunit 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU121878 True 378 lncRNA 0.54 3 9222636 9223257

Neighbor

gene id symbol gene type direction distance location
AMCG00015416 NA coding upstream 47153 9155498 ~ 9175483 (+)
AMCG00015414 NA coding upstream 83187 9139204 ~ 9139449 (+)
AMCG00015413 NA coding upstream 83711 9128035 ~ 9138925 (+)
AMCG00015406 NA coding upstream 159160 9056773 ~ 9063476 (+)
AMCG00015399 NA coding upstream 256986 8964460 ~ 8965650 (+)
AMCG00015417 NA coding downstream 34925 9258182 ~ 9261673 (+)
AMCG00015426 LOC104961656,LOC102799013,LOC103359705,LOC106918378 coding downstream 100298 9323555 ~ 9326614 (+)
AMCG00015425 men1,LOC103391704 coding downstream 125328 9348585 ~ 9355717 (+)
AMCG00015428 NA coding downstream 133706 9356963 ~ 9379060 (+)
AMCG00015427 NA coding downstream 160417 9383674 ~ 9387025 (+)
G97737 NA non-coding upstream 2352 9219836 ~ 9220284 (+)
G97623 NA non-coding upstream 150341 9067943 ~ 9072295 (+)
G97676 NA non-coding upstream 192237 9024645 ~ 9030399 (+)
G97663 vps51 non-coding upstream 237728 8983502 ~ 8984908 (+)
G97640 NA non-coding upstream 258518 8912014 ~ 8964118 (+)
G97745 NA non-coding downstream 14576 9237833 ~ 9238342 (+)
G97730 NA non-coding downstream 97785 9321042 ~ 9321684 (+)
G97770 NA non-coding downstream 104379 9327636 ~ 9331026 (+)
G97777 NA non-coding downstream 122505 9345762 ~ 9347244 (+)
G97989 NA non-coding downstream 432211 9655468 ~ 9657866 (+)
AMCG00015412 NA other upstream 98365 8797071 ~ 9124271 (+)
AMCG00015407 slc25a45 other upstream 186021 9029557 ~ 9036615 (+)
AMCG00015398 NA other upstream 244632 8971466 ~ 8978004 (+)
AMCG00015396 NA other upstream 268952 8951736 ~ 8953684 (+)
AMCG00015397 NA other upstream 329620 8828736 ~ 8893016 (+)
AMCG00015445 LOC102291110,LOC108440839,LOC107679294,LOC107731944,LOC102201806,LOC102799004,LOC108268318,LOC107558438,LOC570544 other downstream 401332 9624589 ~ 9631892 (+)
G98000 NA other downstream 482840 9706097 ~ 9710729 (+)
G98025 NA other downstream 533816 9757073 ~ 9760688 (+)
G98053 NA other downstream 592461 9815718 ~ 9872005 (+)
AMCG00015456 NA other downstream 628415 9851672 ~ 9862136 (+)

Expression


Co-expression Network