G98299


Basic Information

Item Value
gene id G98299
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 10428585 ~ 10432044 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU122608
TTTTTATATTGAAATCTGAACTTTATTTCactcatacaaaataaaaatcaaaactgtTAAAAGTTTACGTACAGCAATTATAATTCGCCCGCTCCCTGACTCGAGAGAGTGGACACAAAAAACGGGCTTCACGCCACTCGGATCAACATGTTGTCActgtatacattaaaacatttaaaaagaaaaacaaaaataaatatttatagaaaggaaagaaattaaaaggaaTCGCGCGCGGTGCgggtgggggagaaaaaaaatgctttgaggAGTCAGTCTATCAAGAAGAGTTTAAGATCTCAGACCCCTTTTCAGCATCACAAACTGGGACAGTTTTAacggaaatgaaaacaaaaaaagtccatatcccccccccccccgccaatTTGTTCTCCCTTTTTAAGGTGtgtgcttaaaaaataaaataaaacaaatggaacTTCTCGATTTAACTGGGGGAGATGACAGCAGCGTAGTTGTGCACAGCGGGTCGTGCACACTATTCAGACATCACAGCCTTAGCTTTCTTAGTTACAGAACAACTGACATCATGTTAGCAGAAGTACCGGGACAGGACTGGCTTGGTCAATGGAAGCCATGGGTGTTAGTCCCAGAGGTGCCCTGCATACCATCTGCCTGGGGGCAATTTGGCATGTGAGCCAGCAGGCTGACCAACAGGTTTGAGTCATTGGGCACAGAGCTGGGAGCCTGTGACACAGACTGTATTTACATCCTGGTAAACAACAAAAGTCATGCCAGTAGTcttcttactttttaaaatgattattctTAAGGTTGTACAGCTGGATGATAAATTATGGGGTGTTTTAGTTAACGCCGTATTCCTTTACCAGTTCCTGTTTTGGACTGGAAGGTTGTTGTCATGACACGCACCAAAACAATGTACAACTGCAACTAGCCAGAGGCTCTTTCAATAAATCATGACTGACAACCTCTACTACTATGACTGATCAACCAGCacgtaaagaaaaaaacacagtggGGTCAACGAGAACTAGAGCACCTCTAGAGCACTTCTGGGATCAACTGGACCAGCGAATCAAGACAGAGATGGTATACCATAAAATTGCACCAAACTGTTTAGAAGCATTGTGTCAGCCATTTGGAACAAACATAGGCCTACATACTGCGGCATCCATTGGCGAGCAAGTTTGTCCCAGTACTTATGGTAAGAGAGTATATTTGGAATTACGTGATgtagtttgtttcagttttcagcttcagctcATGTTTACAGTGCCTACAGCACATATTGGTAGGTACACAAACACCCGGGGTCTCCACACATTATAGAGCCGCAAACCCATTCAATTCAGACCCTACGGTCCGCTGTGCAGCTTGGTTTGGCCCTATACCCGCTGATAAAGAGTTGTACACCGTCAATAAAAACAAGTTGCAAGAAAGCCACACACCCCGCCAGAAATCCCACATCCTCCTCACATCATCATACATACCCCTCTGCTCGCcgcccccccacaaaaaaataaaaataaaaatagaataaccACCCGAGCTCTCCGGGGACAAGCTAAAACAGACACCGAGgtcagagaggaggagagaaaaaaaaaaaaaaatgaacaccaTGTTAATTGCGATCTTGCGGAGAAATGACTCCCTGGCAGCAATATGTTTGCGTGTTTGTCAACCACAGGCATGACTGCGAATTAAAACAGGGCCAGCCAATTTAAAACAGATATATGTacaagagtaataagttaatgAATAGGGAGGCTGTCTTTGACCAAACTTGAGGGGGGGGGTGCATGAAAAGACATCCACACCCAAGTTATTCCAGACTGGCCTGCAGCTTGAATATGGTCATCTGAATGCAGATTACAGTTAAATGCCTGATTTCATATTGGAGGTCCAAAAAACACCCAATGGACATTAAAGGAAGTACCAGTTtggctgttattttttttctctctctctcgctagCAATATTTTGTGTGCAGGGGGTTAATcgatatgtatttcaaaatcaaCAGAACAATGATGGGGACAGGATTATGGTGTTCAAATGCGTGCGGTGGGAAGAGAAAAGAATATGAATATTACAAAACGCTGCCTACATAACAGACAGTATCATTTCCTATGTCTGTAGCCAGTTATAGATTTGATTGCCTTCAGGGGAGGgaaaagattaaattaacaaacaaaaaaattaacaaaaaaaatactaaactaAATACTTAACTAGACACACTAACTGTGAAACATGAAGTGAAGGGGGTATATCTGACACTATTAACTCCAAAGTAACCTTCTAGGATGTATAAATGAATGGTAAAACAGTCTTTAGGGGGAACAGTCGAAACTCTTCCATGGGGACACGGGCTCAGCTGAAATACATCGCCTTCATAAAGGCACATTTCAGAATCAGCCtttggggagCTGTACTGAGTGTACGTGGCCTGCTCTTTCCACACCTGGCAGGAAAGGGGAgagaccttttttttaataactcaGTTGGTTgcgttttctttcttcctccacaataaaataaaaaaacaaaacaaaacaaacgaatATGGTAAAACACATAACATACAACCTATTCTTTGTTGTCTTCATCTCCTTGTCATCTGCGTTGTTGTAGTTCATTCATCCTTTTTAAGATCTGCATTTTGTGTCCTCCCCACTCCGATgcaggaaaattaaaacaacccaagtaaaaagtaaaaagaggagggggtggggggggcgggggagggaggagggggcagCTAGGAGTCGTAGTCTTCGTCGTCATCGTCATCCtcgtggggtgggggggcaggtggGGCAGAGCCCAGCAACGAGGAGGGGGGCATCAAGTTGCCCAGGGGCATGACCAGGCTTCCCTGCGGCGCCCCCATGTGCAGATAAGGGGGGGGCAAACTCGGGCTGAAACAGACAGAGGCGGGGAACAACGATAACGCAACATTGCTAGACACACCAGTAAGTTTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU122608 True 2975 lncRNA 0.43 2 10428585 10432044

Neighbor

gene id symbol gene type direction distance location
AMCG00015503 NA coding upstream 33955 10390293 ~ 10394630 (+)
AMCG00015498 NA coding upstream 122813 10303739 ~ 10305772 (+)
AMCG00015491 NA coding upstream 139195 10277440 ~ 10289390 (+)
AMCG00015488 NA coding upstream 164126 10264022 ~ 10264459 (+)
AMCG00015490 NA coding upstream 199749 10228051 ~ 10228836 (+)
AMCG00015502 NA coding downstream 3807 10435851 ~ 10443627 (+)
AMCG00015505 LOC103385808,LOC107690779,LOC103366237,LOC103033313,LOC102208922 coding downstream 52898 10484942 ~ 10489317 (+)
AMCG00015512 NA coding downstream 80591 10512635 ~ 10517039 (+)
AMCG00015509 NA coding downstream 107876 10539920 ~ 10541947 (+)
AMCG00015511 NA coding downstream 111218 10543262 ~ 10546764 (+)
G98282 NA non-coding upstream 49554 10378607 ~ 10379031 (+)
G98277 NA non-coding upstream 62938 10365382 ~ 10365647 (+)
G98244 LOC106578020 non-coding upstream 87740 10339108 ~ 10340845 (+)
G98255 NA non-coding upstream 104615 10323258 ~ 10323970 (+)
G98195 NA non-coding upstream 231181 10196627 ~ 10197404 (+)
G98310 NA non-coding downstream 57864 10489908 ~ 10493701 (+)
G98311 NA non-coding downstream 62480 10494524 ~ 10494951 (+)
G98312 NA non-coding downstream 64792 10496836 ~ 10497062 (+)
G98338 NA non-coding downstream 97916 10529960 ~ 10571890 (+)
G98398 NA non-coding downstream 276377 10708421 ~ 10708753 (+)
AMCG00015504 NA other upstream 9885 10411887 ~ 10418700 (+)
G98251 NA other upstream 111260 10316908 ~ 10317325 (+)
AMCG00015492 NA other upstream 206089 10213001 ~ 10222496 (+)
G98093 NA other upstream 342073 10085428 ~ 10086512 (+)
AMCG00015475 NA other upstream 415697 10001214 ~ 10012888 (+)
G98302 NA other downstream 16122 10448166 ~ 10450663 (+)
G98402 NA other downstream 303935 10735979 ~ 10741133 (+)
AMCG00015528 NA other downstream 440626 10872670 ~ 11227821 (+)
AMCG00015539 NA other downstream 627446 11059490 ~ 11066855 (+)
AMCG00015544 LOC105903120,LOC107562780,LOC108434861,LOC107691965,LOC106577530,LOC107742298 other downstream 926108 11358152 ~ 11416599 (+)

Expression


Co-expression Network