G98546


Basic Information

Item Value
gene id G98546
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 11414367 ~ 11416662 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU122943
GTGAATAAAACATGTCTATATCCAATCTAAAACAAAAGACAGGACACAAATATATTGAGGGGGTGGACAGTCTAAACCTGTCtgagtttttaaatttgtattttattccgCAGAACTGTTTTCAGATCAGAactcacacattttgttttggactGTGAGGCTGCCTCTAAAGGAACCACACTTTACATTCTTTGGAAGCTAGGACCATTAGACAGATTGTTCATATGTCATCtggtttaaaatatactgtatacatttatatatatatatatttattttttaaacacacatgctTCAGTAGGACAAATACAGGACTAGCGGTCTAACTCTCACGTAAGTTTAGACGCACATACGCACACACGATCACCCTGATTTTGTTTGCAACTACACAGGGTCACAGTATCACAATACATGAAGACAGACAGGGAAAGATAAGGATGAGCACTTAACTTGACTTTGAGGAGCTAGGAGGCAACTGGGCGAGTGTGGATGGTAAACAACACGTGTTTGTAGGATGAGGAGTGAGAAAATCCAAAACACGTGACTGATCAATTTGGAGCCTTgataaatgaaatcaaatagTGATTACCTGATCAAAATATCCATCAAAAGTTAaacatttgtctgtgtgtgtgcaaaataaaaataccaacaCAAGGGGGTGCCACTgagctacaaaaataaataactggatTCAGTGAAATTGTTAAGGCAAACTATTAAGTTTTCTTAAATGTTACTTAATATAtaaagggtggggggggcaagGGGAGGGGTCCGGAGGTAGgacataaatatacagtactgagACGAGACAGTTACCAAAAGCAAAGCACGACTCAAATCAAATCTCTTCTAGATAACCGGCATAATCGTAATAATGATAACTAAACACACAGGGATTCACACACAAGCAAGAAACACTGTTACTGTGCATACACTGTAggattaaaaaagcaataacaaaaaaaacattacatgtcAAGGGTAGTATTTGTtcacactgccccctgctggctgGAAGACAGAAATGATCCTTAACTCAGGGATGTGTTGATAAACGAGACTGCTGTTGTCAATGTATAGATTAAAATCCAGAATATTCCAAGTGACtgactttgtatttatttgtactatatatatatatataaaatgttttaagaattCAGCATCAAGGGCAACAATCAATATACAAACACAGTGAACAGCAACTGGCTTCTGTATTGCTGtatatttagtcatttattaacCTCATTAAAGCATTTCCTAGTTGCTTTGCCTGAGTACCCCCTGTAGCCCACTGCAGCTGTCTGAACTGAAGTTTGAAAATATTTGGGGGTGGCCTCTGCCACGAGAGATGCTTTTTACGTCCAATGAGAAGACAGAAGTGGGGTCACCAGAACTTTCATCCACCAATCAAACGTCTCCATCTGGTGACACTACAGTACGCCTGGTGGTGATGTCACAATGGTTGATGAATAACGCAAAATCAGAGATTAGAGCCGTCTTGTTTTTGCTAGATAttaaacgtgtgtgtgtacaggcCTGTAGAGCACTGATTTGCAGTGATGCCGTGTCTGCAATATGAAGAgcggtggaaaaaaaaatccctttgttaggttaaggggggggggggtggatacAAACAGCCTTAGATGTGCTAATGAAACACAGCTGGTGCCCATAATCTTTAAACAGTCACATCCCGGAGGAGAGATGAGAGACGAGAGTAGaagctattttgttttcagtattacTTTTAACCAGCCTAAACTGAATATCTGTgaagtgcatatttattttaatatatactgcCTGAGTCACCGAGCCAGCCAGGGGCAAACGAACTGCATAATCCTTTTTATAATTAGTGGTtggttttgtcatttgttttatttttactgttttacaaCCATGACTAAGGAAGCCTCACGCAGATTGAGGAACACACTCGACACAAGTGAAAGaggaaaaaggaaatcaaaatattgtACTCTAAGCTTTGTTTTTTGCTATTAGTGGTTTCCTTGCCCCCTCTTGGGTTAAGGGGTGGGTGAGGGAGGTTCGGGGGGGGCAGGCACAGAGGGGAAGGTGGGCCCTGGCAGATTAGCGGGGATCGTCAGGGGCAGCCAGCTTGGCCAGACTGGGCTCCACCCCCCAGATCTCCCTGGCGTACTCGGAGATTGTGCGGTCGCTGGAGAATTTGCCAGAGGTGGCGATGTTCCGGATCACCTTCTTGGTCCATTCTTTGGTGTTCT

Function

GO:

id name namespace
GO:0072330 monocarboxylic acid biosynthetic process biological_process
GO:0046031 ADP metabolic process biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006090 pyruvate metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0006096 glycolytic process biological_process
GO:1901292 nucleoside phosphate catabolic process biological_process
GO:0051188 obsolete cofactor biosynthetic process biological_process
GO:0009108 obsolete coenzyme biosynthetic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:1901361 organic cyclic compound catabolic process biological_process
GO:0046939 nucleotide phosphorylation biological_process
GO:0006732 obsolete coenzyme metabolic process biological_process
GO:0006733 obsolete oxidoreduction coenzyme metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0019359 nicotinamide nucleotide biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0019362 pyridine nucleotide metabolic process biological_process
GO:0019363 pyridine nucleotide biosynthetic process biological_process
GO:0009132 nucleoside diphosphate metabolic process biological_process
GO:0046394 carboxylic acid biosynthetic process biological_process
GO:0009135 purine nucleoside diphosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0006757 ATP generation from ADP biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0044270 cellular nitrogen compound catabolic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0042866 pyruvate biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0072524 pyridine-containing compound metabolic process biological_process
GO:0072525 pyridine-containing compound biosynthetic process biological_process
GO:0009166 nucleotide catabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0046700 heterocycle catabolic process biological_process
GO:0046434 organophosphate catabolic process biological_process
GO:0009179 purine ribonucleoside diphosphate metabolic process biological_process
GO:0009185 ribonucleoside diphosphate metabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0019439 aromatic compound catabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0032787 monocarboxylic acid metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0034655 nucleobase-containing compound catabolic process biological_process
GO:0034404 nucleobase-containing small molecule biosynthetic process biological_process
GO:0046496 nicotinamide nucleotide metabolic process biological_process
GO:0016052 carbohydrate catabolic process biological_process
GO:0016053 organic acid biosynthetic process biological_process

KEGG:

id description
ko00010 Glycolysis / Gluconeogenesis

RNA

RNA id representative length rna type GC content exon number start site end site
TU122943 True 2258 TUCP 0.41 2 11414367 11416662

Neighbor

gene id symbol gene type direction distance location
AMCG00015541 NA coding downstream 91867 11271539 ~ 11322500 (-)
AMCG00015536 NA coding downstream 230477 11179092 ~ 11183890 (-)
AMCG00015533 NA coding downstream 406992 10997549 ~ 11007375 (-)
AMCG00015534 NA coding downstream 419482 10989882 ~ 10994885 (-)
AMCG00015530 NA coding downstream 429157 10977415 ~ 10985210 (-)
AMCG00015556 NA coding upstream 1046394 12463056 ~ 12469988 (-)
AMCG00015560 NA coding upstream 1065060 12481722 ~ 12507107 (-)
AMCG00015562 NA coding upstream 1156801 12573463 ~ 12574052 (-)
AMCG00015561 NA coding upstream 1206596 12623258 ~ 12640668 (-)
AMCG00015568 NA coding upstream 1347250 12763912 ~ 12779914 (-)
G98510 NA non-coding downstream 264503 11143518 ~ 11149864 (-)
G98399 NA non-coding downstream 705615 10708421 ~ 10708752 (-)
G98314 NA non-coding downstream 921261 10489579 ~ 10493106 (-)
G98216 NA non-coding downstream 1191842 10173101 ~ 10222525 (-)
G98211 NA non-coding downstream 1248970 10107233 ~ 10165397 (-)
G98591 NA non-coding upstream 130973 11547635 ~ 11547875 (-)
G98648 NA non-coding upstream 1029336 12445998 ~ 12446953 (-)
G98649 NA non-coding upstream 1030926 12447588 ~ 12447829 (-)
G98650 NA non-coding upstream 1032634 12449296 ~ 12449821 (-)
G98651 pcnx3,LOC107560657,LOC107715400 non-coding upstream 1035700 12452362 ~ 12452577 (-)
G98543 NA other downstream 28168 11353783 ~ 11386199 (-)
AMCG00015540 NA other downstream 68877 11332663 ~ 11345490 (-)
AMCG00015535 NA other downstream 153199 11185860 ~ 11261168 (-)
G98502 NA other downstream 168805 11014625 ~ 11245562 (-)
AMCG00015532 NA other downstream 176517 11012650 ~ 11237850 (-)
AMCG00015557 map3k11,LOC101463885,LOC102206973,LOC102778058,LOC100707946 other upstream 983071 12399733 ~ 12430648 (-)
AMCG00015598 timm10,LOC107746912,LOC107674252,LOC107556822 other upstream 2041465 13458127 ~ 13468822 (-)
AMCG00015606 NA other upstream 2254653 13671315 ~ 13845677 (-)
AMCG00015612 zdhhc5a,zdhhc5 other upstream 2417855 13834517 ~ 13864738 (-)
AMCG00015628 NA other upstream 2878306 14294968 ~ 14336329 (-)

Expression


Co-expression Network