G98838


Basic Information

Item Value
gene id G98838
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 13257099 ~ 13259347 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU123296
ttttaaaaataattttaacatcatgttaaaaaaatgcttattttaagaTCTGGCAAACCTTTTCAGCAAATGTACACACATGAGACTACAATGCGTGCACACACTAAAACTTGACACGATCCATTTATTGGAGACAAAGATGTAAGGTTCAAGGTCTGAAACACAGAGTTTGTGGGTTTTTTAATGCCCCATGTGAAATGGGTTGAAGGGgaacaaaagaacaaataatCATCAAAAATAAGATTTTGAGAGAGCTGTATTCACATTTaccatttcaaagaaaagacaGGACGGGCTACATTTCATTGCAGGTGTCAGTTGTGCTAAATGTTGTCCTTTAAGTGACACAAATGGCACATAGTGTTACATATTCCTTACAAGTCTTGACCATTTGTGTCCTGATGGGCTTACTGAATTGCTCTGATTTTATAAACCTAAAGGTCTGAATAAGACCTTATATGGAGAGTGATCAGTGCCAAagttaagatgaacgtgattatgaacatgaagatgattataaacatgaagatgattatgaagaggattatgaatgtgaacatgaggatgattatgaagatgattatgtgtatttatttatttcccgtttgtctctttgctatttacattttgcagtgcgcttctacattttgtagcgtctcttgtatttctttttcaatgtgacaaaacattgaactctgtcaatcagagctagtgGGCGGTAGCCAGTGCACTTATTGGCTAATCTAATgcacataatcatcttcataatcataatcacgttcatcttaattttggcactgatcaccctccataccTTGGATTGGTTTTTAACATAACCATAACTATGCTCTGGGTATCATTCCCTTGTCTTAACAAGTTGGTGAtgactgatttttttatttgtgattgtgTATCTTTAACAAGAGGGAAGTGTTTGTACACTCTCtcatgtgaaatatatttcagttcCACTAAGCGTTCATTGTGTGGAAAGGTATAAACATAGTTGAAATGTGAcagattttttaatattttggggGTTCTGAGAACCCAATAGAAGGTAAATAAAGGTTTTGACACCTCCTTCAGTCAAGCAAGGCTGGATGAAACCATTGGAAACCTGCCCTCCACTGGGTGGAATGAGCCATTGTGCTGCAGCAGAGGGCAGAGTGGGCTGGAGGAGGGAaacaaagcaatgaatgctgggttTGTTACCAGATATGTATGCTTGAGATGGTGCTTGTCCTCCCCTCCAACTAATGAAGGTTAAAACCCCATTATGGCTGTACCAATATCTGCTGTTCTGAGtaatgttgcagtttttttaaGGTTAAACCTTTAAATGTCTCGTTTAGGTTCTGCTATGTGCAGTCTCTCAAgtgatatttattaaatgtataggGAGAGAACAATAGATcgatattttaaatgttggcaGAAACCTTTCACAATGCAGATACACAGTTACAGTCCACCTGTGTGGAGGTTGGTTGGCCACTGTAAATAGTGTATGTGTGCCTATAgcataggcggactggccatcaggcaattctggcaaatggcAGAAGGGCCGGTccatttttttagtttagtgGGACGGTCCCCCCGTGTAGACACCCGGACCGCACATCGCCAACACAACCCACCGCACTTTGTCAGCACCCAGAACCACACTTTGGCAACAAAGCCCtaacccccatccccccacaCCGCACTTTATTGGGACCCAGATTTCACCAGCCGTTGCCACcctgggtaaaagtccagggccaTTTTATGGTCCCAGTCCACCCCTGGTTTGTAGtgaagatggatggataaatatgaaatgtcttcactcaattttaaaataaagactacAAACAGATCATGttcaaatgcataattatacaaaatgcacacatttatgTTGCAGCCGAGAACTTTGAGGTGAAATGCAGGAGGTAATAGAGTGGACAATAGTAATAggtaaggaaataaaaaaaaaaaaaagataatgctgTTTGAATACAAAGTGAAGACTGGAGACTTGGCCAAAGTAGGTTCCTTCAAAAAGTCCCAGTTCTGAGAAATTCTTAAGGCTGCATAAAGTCCAGCTTTTAAAACTTGCATAGATGAATAATCTGAAGTCGATGAATTGTGTTCAGTAGCCTGATGCATCCTGGGTCATTTTCTAAACAGCATTTTACAAACCTTGAAAACTAATGTTCTGTATCATTGTGTTTAGGCCAGAGGGAGAATGAAACCtt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU123296 True 2249 lncRNA 0.39 1 13257099 13259347

Neighbor

gene id symbol gene type direction distance location
AMCG00015585 NA coding upstream 946 13251013 ~ 13256153 (+)
AMCG00015587 NA coding upstream 14208 13240191 ~ 13242891 (+)
AMCG00015583 NA coding upstream 85126 13168657 ~ 13171973 (+)
AMCG00015580 NA coding upstream 101146 13154518 ~ 13155953 (+)
AMCG00015584 NA coding upstream 144297 13111327 ~ 13112802 (+)
AMCG00015590 NA coding downstream 70235 13329582 ~ 13337434 (+)
AMCG00015588 NA coding downstream 92169 13351516 ~ 13366130 (+)
AMCG00015597 NA coding downstream 242296 13501643 ~ 13516584 (+)
AMCG00015600 NA coding downstream 338939 13598286 ~ 13607255 (+)
AMCG00015607 NA coding downstream 429743 13689090 ~ 13716822 (+)
G98831 LOC100846954 non-coding upstream 42453 13213870 ~ 13214646 (+)
G98731 NA non-coding upstream 444407 12812476 ~ 12812692 (+)
G98625 NA non-coding upstream 851980 12399733 ~ 12405119 (+)
G98590 NA non-coding upstream 1709280 11547565 ~ 11547819 (+)
G98569 NA non-coding upstream 1788471 11466852 ~ 11468628 (+)
G98843 NA non-coding downstream 1648 13260995 ~ 13262832 (+)
G98876 NA non-coding downstream 127729 13387076 ~ 13391419 (+)
G98888 NA non-coding downstream 194540 13453887 ~ 13454126 (+)
G98881 timm10,LOC107746912,LOC107674252,LOC107556822 non-coding downstream 198782 13458129 ~ 13459786 (+)
G98889 NA non-coding downstream 234435 13493782 ~ 13516429 (+)
G98759 NA other upstream 210286 12975639 ~ 13046813 (+)
AMCG00015555 NA other upstream 794434 12434166 ~ 12462665 (+)
AMCG00015544 LOC105903120,LOC107562780,LOC108434861,LOC107691965,LOC106577530,LOC107742298 other upstream 1840500 11358152 ~ 11416599 (+)
AMCG00015528 NA other upstream 2029278 10872670 ~ 11227821 (+)
G98878 LOC101159514,LOC106941902,LOC105028768 other downstream 164533 13423880 ~ 13429300 (+)
AMCG00015591 LOC101069382,LOC104961169,LOC107581227 other downstream 173704 13433051 ~ 13437147 (+)
G98884 NA other downstream 186178 13445525 ~ 13447279 (+)
AMCG00015602 NA other downstream 316849 13576196 ~ 13613292 (+)
AMCG00015608 NA other downstream 622078 13881425 ~ 13884671 (+)

Expression


Co-expression Network