G98878 (LOC101159514,LOC106941902,LOC105028768)


Basic Information

Item Value
gene id G98878
gene name LOC101159514,LOC106941902,LOC105028768
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 13423880 ~ 13429300 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU123357
AAGGCCTGTAGGAAGAATGGAGAGATGCGAGcgaggaagagaaggagagatgTGCCTTACTGTGCTGTTGGAGTAACAACAGCgctttctctatttatttatgatattttctattattattgctaCTATTCCTTCTACTACTACTCCAACAGTGAACAGCAGGTACCCCATCAGTGAGGGGGTGCTGTTTGTCACTGaaccattattattactctCACTACTATAATTACCAGAGTGAGCTGCAGTTCCCCATCCTGCCTGTCGTAGCAAGGTGGCGCTGTTTCTCACTTTCCCACTCTAGTCTCCTTATTGGTACAGTTTATGACAGGGTAGGTGCAATTCCACAGGTTGCCAGTTTCAGGGGTGGAGATGCTGTTTCtcactcaaaacaaaaaaaaggcatctaaatggaaaagaaagcagaaaagcTCCCTCTGTCCATTAATGACTCCTcaccctgctctctctctctctctcatcccccTCTCTCATTGGATTCTCAGTAGGATGGCTCAGTCCATTCCGAGTCtaccctctcctcctcctcctcctcctctctctccgccccaccctcctctctctctctctctcacttgctGGCCATGGTGTAGCAGCCGTGCTGGTGCCACTGCATGTCTCTAATGCGCCTCATGGACTGGATCTGAGGGGTGCGTGCCCCCCACTCATTCCAATGCCTGTAGTCCCCTTTCTCCAAGAGGTACTGGTAGCCACGGTAACCGGGGTACTGGTACCCAACCCACGTCCCACAGCTGACCATGATGCTGCCCACTCTGTCAGTGAAGCCGTAGGAGAAGAGGCTGGGCACGTCATCATCCATGATCTCCATCTTCCTGCCCTTGAACTCACCCACCTCATACAGGCAGATCTTGTGCTTCTCTGGGTCCATTCTGACTGGTCTGAATGACATCATCCACTCATTCCTGTAGCTGTTGCTCCAGCTGTCCCAGCGAGGGTACTCTCCCTTCTCCAGCAGGTACATCTCTCCACAGAAATTCATCTGCTCATAGCCCACCCAGGGGCCACACTCGATGCGGACGGAGCGCACACGGTCGAAGCCGCAGTCGCACACGTTCATACACTCCCCTGAGAACTCCATACAGCGGCCCTGGAAATTCTCCTGGTCAAAGATGTACatCTTGTAGGCCATCATCCCAGTTTCTGACTTCTTGCTCTGGGCGCTCTTCCCATCAGTCTGGGAAGCAGCTTTGGAGGACTTCTCACCACTGGAAGACatgctttctttctctctctgtccctgggTAGTGTATGAAGTGGATGcgctttctctgtctctgtctctctgtctctctctctgtcactctctctctatctctctctctct

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU123357 True 1363 TUCP 0.51 6 13423880 13429300

Neighbor

gene id symbol gene type direction distance location
AMCG00015588 NA coding upstream 57750 13351516 ~ 13366130 (+)
AMCG00015590 NA coding upstream 86446 13329582 ~ 13337434 (+)
AMCG00015585 NA coding upstream 167727 13251013 ~ 13256153 (+)
AMCG00015587 NA coding upstream 180989 13240191 ~ 13242891 (+)
AMCG00015583 NA coding upstream 251907 13168657 ~ 13171973 (+)
AMCG00015597 NA coding downstream 72343 13501643 ~ 13516584 (+)
AMCG00015600 NA coding downstream 168986 13598286 ~ 13607255 (+)
AMCG00015607 NA coding downstream 259790 13689090 ~ 13716822 (+)
AMCG00015609 NA coding downstream 373181 13802481 ~ 13821972 (+)
AMCG00015610 LOC100701608,LOC103356189,LOC108412483,LOC103470774,LOC103146641,LOC102233014 coding downstream 403295 13832595 ~ 13834746 (+)
G98876 NA non-coding upstream 32461 13387076 ~ 13391419 (+)
G98843 NA non-coding upstream 161048 13260995 ~ 13262832 (+)
G98838 NA non-coding upstream 164533 13257099 ~ 13259347 (+)
G98831 LOC100846954 non-coding upstream 209234 13213870 ~ 13214646 (+)
G98731 NA non-coding upstream 611188 12812476 ~ 12812692 (+)
G98888 NA non-coding downstream 24587 13453887 ~ 13454126 (+)
G98881 timm10,LOC107746912,LOC107674252,LOC107556822 non-coding downstream 28829 13458129 ~ 13459786 (+)
G98889 NA non-coding downstream 64482 13493782 ~ 13516429 (+)
G98901 NA non-coding downstream 150424 13579724 ~ 13597715 (+)
G98918 NA non-coding downstream 361742 13791042 ~ 13810939 (+)
G98759 NA other upstream 377067 12975639 ~ 13046813 (+)
AMCG00015555 NA other upstream 961215 12434166 ~ 12462665 (+)
AMCG00015544 LOC105903120,LOC107562780,LOC108434861,LOC107691965,LOC106577530,LOC107742298 other upstream 2007281 11358152 ~ 11416599 (+)
AMCG00015528 NA other upstream 2196059 10872670 ~ 11227821 (+)
AMCG00015539 NA other upstream 2357025 11059490 ~ 11066855 (+)
AMCG00015591 LOC101069382,LOC104961169,LOC107581227 other downstream 3751 13433051 ~ 13437147 (+)
G98884 NA other downstream 16225 13445525 ~ 13447279 (+)
AMCG00015602 NA other downstream 146896 13576196 ~ 13613292 (+)
AMCG00015608 NA other downstream 452125 13881425 ~ 13884671 (+)
G99074 aldob,LOC107588335,LOC108424229,LOC108269036,LOC103390983,LOC102232942 other downstream 667645 14096945 ~ 14100855 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_008128 crybb1l1 coding NC_007125.7 CM002898.2 46301973 ~ 46310549 (-)
grasscarp (Ctenopharyngodon idella) CI01000000_05426367_05428676 CRYBB1L1, CRYBB1L2 coding CI01000000 null 5425942 ~ 5428720 (+)