G98901


Basic Information

Item Value
gene id G98901
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 13579724 ~ 13597715 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU123406
atgctgtactgtattaaccctctctctctcagtgcagtgttaatgtactgtagtgtccagtcagtgtgtctgtactgtattaaccctctctctctcagtgcagtgttaatgtactgtagtgtccagtcagtcagtgtgtctgtactgtattaaccctctctctcagtgcagtgttaatgtactgtagtgtccagtcagtcagtgtgtctgtactgtattaaccctctctctcagtgcagtgttaatgtactgtagtgtccagtcaatcAGTCTgttctgcactgtattatttctctctctctgtttcaggTGAACGTGGCTCTGATTGGCCTAAGTGTTCTGGCCTTTGTTCACCCCATAAATGTGTACCTGCATTGTCGCCGTGCGGCTCGTAGGAGAGCAGGAAACAGCACCCCAACAAGCGAGCAGGACAAACTGCAAGACTGAGGGGGCAACACTGTGAACTACCTACTGCCAATGCAGACTGAAAGGGAAAATATAATTCAGCCATTCAAACAGCTATATATACTCAGACACAGAATACAAATGCATGCAGAAACACACCgagacacagagacatgcagacacatacagacacagagacacacagagacatagtTACATGTTGCCTGGACAAAAGTGATGAGACACTCACAACTTCCCTGTCTCAAATTTTGGAAGGgcaaatatcaaaacaaatgtatttgaatatataatgggattttttttatataaaggaaTGCCCCATTCActataacattacattatagtCCTTTTACAGTATAGTACAGGACAATACACTCACACAGCCCCGTCACTGCAGTCCCTGTGGAGTACTGTTCTGTCTCCTCTCAGTCACAACTTCCACAGAATTACAAAGGATCTATTCACTTATATAAATTCAACTTAATATACCTCTGTATTCTTCTTTTAaccaatgtaaaaaataaattactatataaggaaaataaatactatgaTTGTATTATGTTTGTACTTTTTCAACATCTCCTTTTAGtgatttttattagtattttgtaaTGGAAAGAAA

Function

GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04724 Glutamatergic synapse
ko04723 Retrograde endocannabinoid signaling
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU123406 True 1051 lncRNA 0.40 2 13579724 13597715

Neighbor

gene id symbol gene type direction distance location
AMCG00015597 NA coding upstream 63140 13501643 ~ 13516584 (+)
AMCG00015588 NA coding upstream 213594 13351516 ~ 13366130 (+)
AMCG00015590 NA coding upstream 242290 13329582 ~ 13337434 (+)
AMCG00015585 NA coding upstream 323571 13251013 ~ 13256153 (+)
AMCG00015587 NA coding upstream 336833 13240191 ~ 13242891 (+)
AMCG00015600 NA coding downstream 571 13598286 ~ 13607255 (+)
AMCG00015607 NA coding downstream 91375 13689090 ~ 13716822 (+)
AMCG00015609 NA coding downstream 204766 13802481 ~ 13821972 (+)
AMCG00015610 LOC100701608,LOC103356189,LOC108412483,LOC103470774,LOC103146641,LOC102233014 coding downstream 234880 13832595 ~ 13834746 (+)
AMCG00015616 NA coding downstream 387828 13985543 ~ 13993089 (+)
G98889 NA non-coding upstream 63295 13493782 ~ 13516429 (+)
G98881 timm10,LOC107746912,LOC107674252,LOC107556822 non-coding upstream 119938 13458129 ~ 13459786 (+)
G98888 NA non-coding upstream 125598 13453887 ~ 13454126 (+)
G98876 NA non-coding upstream 188305 13387076 ~ 13391419 (+)
G98843 NA non-coding upstream 316892 13260995 ~ 13262832 (+)
G98918 NA non-coding downstream 193327 13791042 ~ 13810939 (+)
G99053 NA non-coding downstream 319880 13917595 ~ 13918028 (+)
G99056 NA non-coding downstream 327533 13925248 ~ 13933503 (+)
G99068 NA non-coding downstream 453780 14051495 ~ 14065138 (+)
G99070 NA non-coding downstream 466214 14063929 ~ 14109320 (+)
G98884 NA other upstream 132445 13445525 ~ 13447279 (+)
AMCG00015591 LOC101069382,LOC104961169,LOC107581227 other upstream 142577 13433051 ~ 13437147 (+)
G98878 LOC101159514,LOC106941902,LOC105028768 other upstream 150424 13423880 ~ 13429300 (+)
G98759 NA other upstream 532911 12975639 ~ 13046813 (+)
AMCG00015555 NA other upstream 1117059 12434166 ~ 12462665 (+)
AMCG00015608 NA other downstream 283710 13881425 ~ 13884671 (+)
G99074 aldob,LOC107588335,LOC108424229,LOC108269036,LOC103390983,LOC102232942 other downstream 499230 14096945 ~ 14100855 (+)
AMCG00015657 NA other downstream 1451208 15048923 ~ 15200978 (+)
G99475 NA other downstream 1716321 15314036 ~ 15314414 (+)
G99541 NA other downstream 2199235 15796950 ~ 15801634 (+)

Expression


Co-expression Network