G99002


Basic Information

Item Value
gene id G99002
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 13579725 ~ 13816527 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU123574
atgcgTTATTTCTTTCCAttacaaaatactaataaaaatcaCTAAAAGGAGATGTTGAAAAAGTACAAACATAATACAAtcatagtatttattttccttatatagtaatttattttttacattggtTAAAAGAAGAATACAGAGGTATATTAAGTTGAATTTATATAAGTGAATAGATCCTTTGTAATTCTGTGGAAGTTGTGACTGAGAGGAGACAGAACAGTACTCCACAGGGACTGCAGTGACGGGGCTGTGTGAGTGTATTGTCCTGTACTATACTGTAAAAGGactataatgtaatgttatagTGAATGGGGCAttcctttatataaaaaaaatcccattatatattcaaatacatttgttttgatatttgcCCTTCCAAAATTTGAGACAGGGAAGTTGTGAGTGTCTCATCACTTTTGTCCAGGCAACATGTAactatgtctctgtgtgtctctgtgtctgtatgtgtctgcatgtctctgtgtctcGGTGTGTTTCTGCATGCATTTGTATTCTGTGTCTGAGTATATATAGCTGTTTGAATGGCTGAATTATATTTTCCCTTTCAGTCTGCATTGGCAGTAGGTAGTTCACAGTGTTGCCCCCTCAGTCTTGCAGTTTGTCCTGCTCGCTTGTTGGGGTGCTGTTTCCTGCTCTCCTACGAGCCGCACGGCGACAATGCAGGTACACATTTATGGGGTGAACAAAGGCCAGAACACTTAGGCCAATCAGAGCCACGTTCAcctgaaacagagagagagaaataatacagtgcagaacAGACTgattgactggacactacagtacattaacactgcactgagagagagggttaatacagtacagtacagacacactgactgactggacactacagtacattaacactgcactgagagagagagggttaatacagtacagacacactgactggacactacagtacattaacactgcactgagagagagagggttaatacagtacagca
>TU123577
ggttaatacagtacagtacagacacactgactgactggacactacagtacattaacactgcactgagagagagaggattaatacagtacagacacactgactggacactacagtacattaacactgcactgagagagagagggttaatacagtacagacacactgactggacactacagtacattaacactgcactgagagagagagggttaatacagtacagca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU123574 True 995 lncRNA 0.39 2 13579725 13597723
TU123577 False 225 lncRNA 0.43 3 13579725 13816527

Neighbor

gene id symbol gene type direction distance location
AMCG00015599 NA coding downstream 58711 13520664 ~ 13521014 (-)
AMCG00015592 unc93b1 coding downstream 125949 13442591 ~ 13453776 (-)
AMCG00015595 NA coding downstream 147369 13426856 ~ 13432356 (-)
AMCG00015593 LOC108268441,LOC105020884,LOC101159514,LOC107676536,LOC107741212,LOC105028768 coding downstream 154849 13424469 ~ 13424876 (-)
AMCG00015596 NA coding downstream 170017 13369403 ~ 13409708 (-)
AMCG00015613 NA coding upstream 10450 13826977 ~ 13829722 (-)
AMCG00015611 clp1,LOC107750374,LOC107680590,LOC107594950 coding upstream 49324 13865851 ~ 13869990 (-)
AMCG00015614 NA coding upstream 240812 14057339 ~ 14076142 (-)
AMCG00015615 NA coding upstream 262967 14079494 ~ 14084022 (-)
AMCG00015623 NA coding upstream 280898 14097425 ~ 14101752 (-)
G98993 NA non-coding downstream 38768 13538527 ~ 13540957 (-)
G98992 NA non-coding downstream 39727 13539618 ~ 13539998 (-)
G98973 NA non-coding downstream 60205 13464858 ~ 13519520 (-)
G98950 NA non-coding downstream 163225 13396647 ~ 13416500 (-)
G98953 NA non-coding downstream 243796 13329892 ~ 13335929 (-)
G99049 NA non-coding upstream 66596 13883123 ~ 13884670 (-)
G99051 NA non-coding upstream 84829 13901356 ~ 13902314 (-)
G99055 NA non-coding upstream 101548 13918075 ~ 13918324 (-)
G99058 NA non-coding upstream 108721 13925248 ~ 13931122 (-)
G99063 NA non-coding upstream 217731 14034258 ~ 14038303 (-)
AMCG00015598 timm10,LOC107746912,LOC107674252,LOC107556822 other downstream 110903 13458127 ~ 13468822 (-)
AMCG00015557 map3k11,LOC101463885,LOC102206973,LOC102778058,LOC100707946 other downstream 1149077 12399733 ~ 12430648 (-)
G98546 NA other downstream 2163063 11414367 ~ 11416662 (-)
G98543 NA other downstream 2193526 11353783 ~ 11386199 (-)
AMCG00015540 NA other downstream 2234235 11332663 ~ 11345490 (-)
AMCG00015612 zdhhc5a,zdhhc5 other upstream 17990 13834517 ~ 13864738 (-)
AMCG00015628 NA other upstream 478441 14294968 ~ 14336329 (-)
G99213 NA other upstream 631184 14447711 ~ 14456695 (-)
G99286 NA other upstream 664667 14481194 ~ 14482908 (-)
AMCG00015640 LOC103356187,LOC107382365,LOC107664566,LOC107551445,LOC107556825,LOC101483122,LOC102289392 other upstream 686237 14502764 ~ 14515279 (-)

Expression


Co-expression Network