G99375


Basic Information

Item Value
gene id G99375
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 15191669 ~ 15252714 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU124096
CCCCTGCTCCAGTGGTGCCCAGGCAGAAGGTGGTCGTCGTGGCAATGCCCCCCTCGCCATGAGCACCACAACTCACGCCCCCCACAGCAACATCCTCCTCCCCCGTCTCCGGGGCGACGGAGGGGCGTAGAGACTGGGCGGTCGCCGTGGCGGTGTCCCTCTCGTCCTCCAccacctcctcttcctccctcggCCGCTGGGTCTCTGGGTTGTGTCGCCGGTGTGGTCTGTTGTGCGACAGTTGCTTTGATGAGGAGTGCACCCTTGTGTGTTGCTACACAAGTCACGCAGCTTGTTGCgctgttgttgtggttgtggaAATGGCCGAGTGCACTAGTTGTGAAGCTGTTGTGATTGACGCGGTTGTGCGTGGGGTAGGTGTGGCTGAGGTGTGAGTCTGTGTCTTAGGgtcagtgtgtgtgtctgaaccTGAGTGCCAGTGCGTATTGTACAGTATTGTATACCTtaatacagtgtagtatagtacagtgtagtttAGTATACTGTTGGGATTGGGAAAATAAAGGAGGTTAGGAGAGAGAAGGCAGGGTGGTTAGTGTGtcataatacagtatattagtGTAAGATATGGGTTAATACactatagtatagtgcagtaaaGTATAGGATAGTATACAGTTGTATACTATAGTGCAGTATAGCATGGCACAGTATTGTGTAGTATAGTGTGGCAGAGTTTAATAGGACACTGTGGTATAATACAGTagggcacactgactgactagaTACCACAGTACATTAATGCTGACTGCCCTGTAAAGTGCATttggactgactgactggacactacagtacattaataccgagagagaaagagactgtttatttacagtatatatttactgCCTCTGTCACCTTGTACATTTGTCACAGGGATAGAGAGCAATTTTGAATAGAGAATGTAAATAAGGGATTTGCACGAGAGAGAAATagagggttaatatagtacagtatagacATAGAttgaaaaatacagtacaataacactgcactgagagagagagagagagatgaggaggTGTGGGGGGAGGCGAGAGAATGGAGAATGTAGCAATAAAACAGCAGCAGTAGTGCTATAAGCAGAAATAGccatagtaaaaataataattacacgaGCTTACCTGTATATTTAGACACGCACTcttatacaaacacacaaaacatcaaaCATAGCTAATAagtattattcatatttgtatgaATATAATACAAACGGACAAAACAAGGAACTTATTAAAAAACTAGTGGGGACATGACGTCACAGCTAACACGCACCTCAAAACACTGTCCCGAAATATCAACAATACTAATACGGATGCTGCTAATACGTATGCCAgctagtcataataataataataataataataataataataataataataattacctaTTGTGTACTTATTCTTTGTAGTTTGCGaaagttaatatataaataaataaataaataaataaataaataaataaactgacgAGCGAGAGAGTGGTATCAGGCAGAAAAAGAGAGTAGAAACGCCAAAGGGAGGCGAAAGGAGGAGTAAACTGATAGAGAGATGAAGGGATGGGATGGAATGCGAGGGAAgggaggatgagagagagagagacagacagacggagcAGCGTCGTTCCCTGATGTCAACAGTCCGTCGAAACCACGGAACTTCCGCCTCGGTCTGGCTGCAGCTTGCTT
>TU124097
CCCCTGCTCCAGTGGTGCCCAGGCAGAAGGTGGTCGTCGTGGCAATGCCCCCCTCGCCATGAGCACCACAACTCACGCCCCCCACAGCAACATCCTCCTCCCCCGTCTCCGGGGCGACGGAGGGGCGTAGAGACTGGGCGGTCGCCGTGGCGGTGTCCCTCTCGTCCTCCAccacctcctcttcctccctcggCCGCTGGGTCTCTGGGTTGTGTCGCCGGTGTGGTCTGTTGTGCGACAGTTGCTTTGATGAGGAGTGCACCCTTGTGTGTTGCTACACAAGTCACGCAGCTTGTTGCgctgttgttgtggttgtggaAATGGCCGAGTGCACTAGTTGTGAAGCTGTTGTGATTGACGCGGTTGTGCGTGGGGTAGGTGTGGCTGAGGTGTGAGTCTGTGTCTTAGGgtcagtgtgtgtgtctgaaccTGAGTGCCAGTGCGTATTGTACAGTATTGTATACCTtaatacagtgtagtatagtacagtgtagtttAGTATACTGTTGGGATTGGGAAAATAAAGGAGGTTAGGAGAGAGAAGGCAGGGTGGTTAGTGTGtcataatacagtatattagtGTAAGATATGGGTTAATACactatagtatagtgcagtaaaGTATAGGATAGTATACAGTTGTATACTATAGTGCAGTATAGCATGGCACAGTATTGTGTAGTATAGTGTGGCAGAGTTTAATAGGACACTGTGGTATAATACAGTagggcacactgactgactagaTACCACAGTACATTAATGCTGACTGCCCTGTAAAGTGCATttggactgactgactggacactacagtacattaataccgagagagaaagagactgtttatttacagtatatatttactgCCTCTGTCACCTTGTACATTTGTCACAGGGATAGAGAGCAATTTTGAATAGAGAATGTAAATAAGGGATTTGCACGAGAGAGAAATAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU124096 True 1711 lncRNA 0.43 4 15191669 15252714
TU124097 False 954 lncRNA 0.48 3 15191669 15250902

Neighbor

gene id symbol gene type direction distance location
AMCG00015654 NA coding upstream 35416 15138046 ~ 15156253 (+)
AMCG00015650 NA coding upstream 182160 14992880 ~ 15009509 (+)
AMCG00015653 NA coding upstream 222857 14966603 ~ 14968812 (+)
AMCG00015648 NA coding upstream 300726 14830842 ~ 14890943 (+)
AMCG00015646 NA coding upstream 384271 14720074 ~ 14807398 (+)
AMCG00015661 NA coding downstream 7327 15260041 ~ 15269845 (+)
AMCG00015663 NA coding downstream 60839 15313553 ~ 15348690 (+)
AMCG00015665 NA coding downstream 458478 15711192 ~ 15728592 (+)
AMCG00015668 NA coding downstream 575957 15828671 ~ 15902686 (+)
AMCG00015673 NA coding downstream 707103 15959817 ~ 15961407 (+)
G99348 NA non-coding upstream 29804 15052397 ~ 15161865 (+)
G99350 NA non-coding upstream 284426 14905607 ~ 14907243 (+)
G99342 NA non-coding upstream 311594 14879756 ~ 14880075 (+)
G99325 NA non-coding upstream 415208 14776098 ~ 14776461 (+)
G99259 NA non-coding upstream 573059 14618251 ~ 14618610 (+)
G99566 NA non-coding downstream 649737 15902451 ~ 15959723 (+)
G99644 NA non-coding downstream 956729 16209443 ~ 16209643 (+)
G99662 NA non-coding downstream 1043111 16295825 ~ 16296030 (+)
G99697 NA non-coding downstream 1206146 16458860 ~ 16504418 (+)
G99742 NA non-coding downstream 1283371 16536085 ~ 16536332 (+)
G99074 aldob,LOC107588335,LOC108424229,LOC108269036,LOC103390983,LOC102232942 other upstream 1090814 14096945 ~ 14100855 (+)
AMCG00015608 NA other upstream 1306998 13881425 ~ 13884671 (+)
AMCG00015602 NA other upstream 1578377 13576196 ~ 13613292 (+)
G98884 NA other upstream 1744390 13445525 ~ 13447279 (+)
AMCG00015591 LOC101069382,LOC104961169,LOC107581227 other upstream 1754522 13433051 ~ 13437147 (+)
G99475 NA other downstream 61322 15314036 ~ 15314414 (+)
G99541 NA other downstream 544236 15796950 ~ 15801634 (+)
G99624 NA other downstream 878330 16131044 ~ 16131387 (+)
AMCG00015682 NA other downstream 1180729 16433443 ~ 16457842 (+)
AMCG00015687 NA other downstream 1241978 16494692 ~ 16498531 (+)

Expression


Co-expression Network