G99541


Basic Information

Item Value
gene id G99541
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 15796950 ~ 15801634 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU124310
atgacaagttgacacaagtgttgccaaagcatttccAGATACAGTATAGGGaggaaattaatacaataaaataaaaaatagcccaatttccatttgtgtcccaggaTCTGTGCCGcgatctttcttgaagtgtggtgcccagaactgtacacaattatattttgttaatatacataatacatattacttacattaataaataataaagcatcaCTCACCCAGTGGGATATCATGGATTGCTTGTCCTGAATTTGTTTTCTCCAGCGAGGTGTTATGGGTGAGATGCTGCCAATGTGGAGTTTGTCCTGTATTTATTAGTCTGTATTGCTGCCATGACAGAAAATACCCTTTCAACTACAAATGATCTTGTAAATGGCAGAAAATGCTTCATGGGTTTCTGCTCAATGATAGGATATTGACATTTAACCAGCATCTAGAATTGTGACAGACAGCAGTTTGAGAACACTGCTGACAGAACAGTGCCATCTTGTGTTagagcaccacacacacacatgcaatcactgacacacacacccaggttGACACTTCATAatataaggttttatttttcattgattcTCTTGTATCTTTGTGTGTAATCATTGCCCAAAGGTACACAGCAAGTACGGGGAGTCTGCTAAAttcaacacacactcacacactggaGAAATCAGTGACACAATCCAGAACCCTCCACTACTTCCCCAACACTAACTCCCAAAATACCTGCCCCTCCTCTCTAACCCCCATGGAACTGCcccagagagaaagagaaggagggagagggagagtgagtgagtgtgggtAAAGGGGTATTTTAGTATTGATTTAGAATTTGAATTTTTAGTGAATAAAATATGAGGGGTATTTACTTATGATACAAGGTGCTGGGACAATTGCTGAGATGGTGTATGTTTGATCTGAAATCATCTTGGGCAGagggagacacacagggagggcgagcgagagacagagagcgtAGTGTTTCTGAGATTTTTGGCAGGCAGTGAGAtcgacagagacagacacacaggggcTGAAGatgctatatgtgtgtgtgtgtgtatttgtcagtgtctgtgtgtcactgtgtgtgtgtgtgtgggtctgtgtgccAACTCAGAAGATATCAGGACAGCTACTCCAGTCCTGTGGCTCCTTGGCCTTGGCCTCCCAGTAGCCCCCCTTGTAGATGTGCGTTTCTTCTTGGGTCACTGGGTCCTTGCAGCGCTCGAACCACATGGCCTTGTAGTTGTCCACATGGGggGCTTTTCAGAGCTGTTCCAGTGGGACCCTCCTCTGAGTCTGCTGAGAGGAGAAAATTAaccaaattaatcaattaataaaacagctgccatggaaaacagaaatgagTGTGCATGGAGGGGAAGAAAGGGGGTGAGATCTATACCCATCTTTAGATCAATCTATACCTATAGAGTGCAACGTGACCAGAGACGCAAACCCAAGCACTCTACAGAGCTAACACCACAGccgaagaggaggaggaggagggtggcaCAGGATGAGGGGCTGAAATGTTATGGATCAGGTATAGAAACATTTTCAGGCAGAGTgggggtgagagggagagagagactgggaaagggagaaagagggagaagcagggaaagagaagaaaaggggATGAATGAAAGCAGGGGtgatggagagagggggggagggacaGATGGAGGGAGGGTACTTGCTTGTCAACAGTGTCTCTGCAGGGCTCTCCACTGGCAAGGCTTGAAAGACAGGAGATGAAATGAGAAGatgtaacaaacaaaaatgacaacagaGAACGAACGAGTGGAGGGCCATAAATGAGATGCAGAACAGCAGACCGGGGAGGTAATCGGAAAACAAGTGGAAAACGACAACACAGcgccttcctcctcctccctctttctctgtcagAGGTTGCATAgtcaatgtactgtagtgtctcaGTCAGTCATACATAATACTTTGACAGTTATCGtataaatattcaatatgaAAAGAATCACTGATAAGTTTACGTCACAGCGCAGCAAAAGTTGAAAATACTTGATCTCCTGTGCGCCGCTCTGCTTTGCCACGTCTCAGCTCCGCCCCAGTGTGAAAACCCCTTTAGTCAGTGAGTCAGTatatcagtctgtgtgtcaatCAGTGAATAAATGTATTAGGCCTTGCCTCTCTCCTCACCCTCCTCCACCGCACGGACAGCTtcactctccctcttcctccgcACGCTCCTCTGCTTCTCCTCCAGACGCTGTTTCTCGGCATTGGCCTCGTCCCAGCGGCCCTGCTCCATCAGCCGCTGGTCCGGCCGTGCCCGGCTGTCTGTGGGTGCCacgccctcctcctcctcattcaGGGTCAGCGCCAGCTCGGAGAAAAAGTACAT

Function

GO: NA

KEGG:

id description
ko03060 Protein export

RNA

RNA id representative length rna type GC content exon number start site end site
TU124310 True 2395 TUCP 0.47 3 15796950 15801634

Neighbor

gene id symbol gene type direction distance location
AMCG00015665 NA coding upstream 68358 15711192 ~ 15728592 (+)
AMCG00015663 NA coding upstream 448260 15313553 ~ 15348690 (+)
AMCG00015661 NA coding upstream 527105 15260041 ~ 15269845 (+)
AMCG00015656 NA coding upstream 582693 15205590 ~ 15214257 (+)
AMCG00015654 NA coding upstream 640697 15138046 ~ 15156253 (+)
AMCG00015668 NA coding downstream 27037 15828671 ~ 15902686 (+)
AMCG00015673 NA coding downstream 158183 15959817 ~ 15961407 (+)
AMCG00015671 patl1 coding downstream 160725 15962359 ~ 15986250 (+)
AMCG00015670 NA coding downstream 207402 16009036 ~ 16047634 (+)
AMCG00015669 NA coding downstream 252707 16054341 ~ 16057795 (+)
G99384 NA non-coding upstream 525293 15248249 ~ 15271657 (+)
G99375 NA non-coding upstream 544236 15191669 ~ 15252714 (+)
G99348 NA non-coding upstream 635085 15052397 ~ 15161865 (+)
G99350 NA non-coding upstream 889707 14905607 ~ 14907243 (+)
G99342 NA non-coding upstream 916875 14879756 ~ 14880075 (+)
G99566 NA non-coding downstream 100817 15902451 ~ 15959723 (+)
G99644 NA non-coding downstream 407809 16209443 ~ 16209643 (+)
G99662 NA non-coding downstream 494191 16295825 ~ 16296030 (+)
G99697 NA non-coding downstream 657226 16458860 ~ 16504418 (+)
G99742 NA non-coding downstream 734451 16536085 ~ 16536332 (+)
G99475 NA other upstream 482536 15314036 ~ 15314414 (+)
AMCG00015657 NA other upstream 595972 15048923 ~ 15200978 (+)
G99074 aldob,LOC107588335,LOC108424229,LOC108269036,LOC103390983,LOC102232942 other upstream 1696095 14096945 ~ 14100855 (+)
AMCG00015608 NA other upstream 1912279 13881425 ~ 13884671 (+)
AMCG00015602 NA other upstream 2183658 13576196 ~ 13613292 (+)
G99624 NA other downstream 329410 16131044 ~ 16131387 (+)
AMCG00015682 NA other downstream 631809 16433443 ~ 16457842 (+)
AMCG00015687 NA other downstream 693058 16494692 ~ 16498531 (+)
AMCG00015703 rps3a,LOC106592945 other downstream 1296825 17098459 ~ 17131775 (+)
G100007 NA other downstream 2518422 18320056 ~ 18325904 (+)

Expression


Co-expression Network