G99697


Basic Information

Item Value
gene id G99697
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 16458860 ~ 16504418 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU124536
gaaagggggtcaaacacagtattcgtatggtgttcctaataatcctttaggtgagtgtatactgtacTAACAACCCCTCTCTCTTCATCTCAGGTCTGGAGGATCTCTTCGACACCCCTAACCTGTGTggtctctcctcctccctccccctctctctctccgactCCAAGCACCGTACTCTGGTCTCACTCTCCGAGGATGGGGTAGTGGGGGAAGGAGCGTCAAACTCTTCCTATACATCCCTCCCTCACTTCTCCGCCCTCCATCCCTTCATCCTGGTGCTGTGGAGTGAGGGAGCGGGTGTGCCGCTGTTCATCGGACGAGTGGCCGATCCCAGCATGGGGctatgggagagagagagagagagagaaattgggGGGGAGTGAGACCAGGGtagggagaggagggggtggtGGAGAGAGTGGGGGAGatgagagaggggcagagattGCCCTCTCAGTTTAAAGGACAGCAAACATAATGTAgtacaatgtaaaacaatgtatcGCAATGGACACTATCACACAATTAAGCTGCAATTATCACAAAACTACACAAACAGTTCCTGTAAAAGTCAATAAAAAGCTTGGGATTGTCA
>TU124537
gaaagggggtcaaacacagtattcgtatggtgttcctaataatcctttaggtgagtgtatactgtacTAACAACCCCTCTCTCTTCATCTCAGGTCTGGAGGATCTCTTCGACACCCCTAACCTGTGTggtctctcctcctccctccccctctctctctccgactCCAAGCACCGTACTCTGGTCTCACTCTCCGAGGATGGGGTAGTGGGGGAAGGAGCGTCAAACTCTTCCTATACATCCCTCCCTCACTTCTCCGCCCTCCATCCCTTCATCCTGGTGCTGTGGAGTGAGGGAGCGGGTGTGCCGCTGTTCATCGGACGAGTGGCCGATCCCAGCATGGGGctatgggagagagagagagagagagaGGGAGatgagagaggggcagagattGCCCTCTCAGTTTAAAGGACAGCAAACATAATGTAgtacaatgtaaaacaatgtatcGCAATGGACACTATCACACAATTAAGCTGCAATTATCACAAAACTACACAAACAGTTCCTGTAAAAGTCAATAAAAAGCTTGGGATTGTCA
>TU124539
gaaagggggtcaaacacagtattcgtatggtgttcctaataatcctttaggtgagtgtatactgtacTAACAACCCCTCTCTCTTCATCTCAGGTCTGGAGGATCTCTTCGACACCCCTAACCTGTGTggtctctcctcctccctccccctctctctctccgactCCAAGCACCGTACTCTGGTCTCACTCTCCGAGGATGGGGTAGTGGGGGAAGGAGCGTCAAACTCTTCCTATACATCCCTCCCTCACTTCTCCGCCCTCCATCCCTTCATCCTGGTGCTGTGGAGTGAGGGAGCGGGTGTGCCGCTGTTCATCGGACGAGTGGCCGATCCCAGCATGGGGctatgggagagagagagagagagagaaattgggGGGGAGTGAGACCAGGGtagggaGAGatgagagaggggcagagattGCCCTCTCAGTTTAAAGGACAGCAAACATAATGTAgtacaatgtaaaacaatgtatcGCAATGGACACTATCACACAATTAAGCTGCAATTATCACAAAACTACACAAACAGTTCCTGTAAAAGTCAATAAAAAGCTTGGGATTGTCA

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU124536 True 598 lncRNA 0.51 3 16458860 16504418
TU124537 False 543 lncRNA 0.50 3 16458860 16504418
TU124539 False 571 lncRNA 0.50 3 16458860 16504418

Neighbor

gene id symbol gene type direction distance location
AMCG00015679 NA coding upstream 25483 16420396 ~ 16433377 (+)
AMCG00015674 NA coding upstream 346322 16110567 ~ 16112538 (+)
AMCG00015675 NA coding upstream 392343 16060344 ~ 16066517 (+)
AMCG00015669 NA coding upstream 401065 16054341 ~ 16057795 (+)
AMCG00015670 NA coding upstream 411226 16009036 ~ 16047634 (+)
AMCG00015689 NA coding downstream 5279 16509697 ~ 16512290 (+)
AMCG00015688 NA coding downstream 12478 16516896 ~ 16522881 (+)
AMCG00015692 NA coding downstream 64030 16568448 ~ 16569251 (+)
AMCG00015686 NA coding downstream 67233 16571651 ~ 16575186 (+)
AMCG00015699 NA coding downstream 175328 16679746 ~ 16710802 (+)
G99662 NA non-coding upstream 162830 16295825 ~ 16296030 (+)
G99644 NA non-coding upstream 249217 16209443 ~ 16209643 (+)
G99566 NA non-coding upstream 499137 15902451 ~ 15959723 (+)
G99384 NA non-coding upstream 1187203 15248249 ~ 15271657 (+)
G99375 NA non-coding upstream 1206146 15191669 ~ 15252714 (+)
G99742 NA non-coding downstream 31667 16536085 ~ 16536332 (+)
G99745 NA non-coding downstream 33819 16538237 ~ 16539381 (+)
G99771 NA non-coding downstream 94061 16598479 ~ 16599419 (+)
G99772 NA non-coding downstream 95783 16600201 ~ 16602947 (+)
G99774 NA non-coding downstream 101338 16605756 ~ 16605979 (+)
AMCG00015682 NA other upstream 1018 16433443 ~ 16457842 (+)
G99624 NA other upstream 327473 16131044 ~ 16131387 (+)
G99541 NA other upstream 657226 15796950 ~ 15801634 (+)
G99475 NA other upstream 1144446 15314036 ~ 15314414 (+)
AMCG00015657 NA other upstream 1257882 15048923 ~ 15200978 (+)
AMCG00015703 rps3a,LOC106592945 other downstream 594041 17098459 ~ 17131775 (+)
G100007 NA other downstream 1815638 18320056 ~ 18325904 (+)
AMCG00015725 smad1 other downstream 2240469 18744887 ~ 18771966 (+)
G100338 herc3 other downstream 3762989 20267407 ~ 20268285 (+)
AMCG00015796 hspa12b,LOC107583310,LOC107697252,LOC107721672 other downstream 6174419 22678837 ~ 22683895 (+)

Expression


Co-expression Network