G100046


Basic Information

Item Value
gene id G100046
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 18628322 ~ 18630144 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU124964
attttataaacaaattgtcatttaattaaatttcagGTGGTTACATCAACTACCAATTGAAGTTGGAAACACAAAGTAAACTCCAGGGCATTTATTCACCACTGTGCCAGACCATGAGCTGCACTGGAACACAAATCGACCCCAGCCGAGTCCGTCAATTCACATCCTCGCAGGGGACAGCTATACTGTGCAGCCCCCCGAAAGGAGCTCTGCAATGAACATTTGTTTCATTCAGTTTGTTCTTAAAATGTTCACCTCAGCTTTTGTATGGTAGATAATACTCACTTTgataacatttcaaaatcagaATGGATGATGGAGGGGGAAAGCAAGGAgaagggaaaaagaaacaaaaaaaactcccGATCGTACATGaactaaaaacataacaaaaaagtaaatcaaacaaagcaTCCATGTCACATCTTCCTCTTTTGAGTACTTATGTATAACACTGGGGAGAAAGGAAAAGACAGAATTagtcaaattatgtatttgatgCCTACACTTTAATACTTAGTATTACCAATACAGCAGAcctcaaaagcaaacaaagctgAGGTTCTGGTAAATAGCCTTATTAAAGCATTATTGttggaattaaacaaatgacaTTTAAAGTCAGTCTGTAAatcagtctttttttgttttgtttatatataatgaaaaatgataCTTTGCCAGTCAccccccccctttactGATGCACACTGATCTGGATTCACATTACAATGTTAGTGTCAAATTAAGTTACatacaatatgtacaatttAGCCTAGAGTCAAGATTTTTTTGGTTTACAGGTCAGTTTATTGTACCAATAGCAAAAGCAGTTTTTGCAattcatattttccatttcaattgaGAACAGATTTTACAAAAACTCTGAAGCAgactaaaatgttaaaaatacatgcagAACATACAATTGTATACCAGCAGTCACCCTAAGCTTACCAACAttttttgaattgaaaaagtcACCAGATTTTCTGTTCAAGCAAAAGTTCATGGTCTTCGTGAGCTTTTAAAATCCCTACCATTGTTTCCTCGCAGAAAAGCATCTCCATACTTGTTCTTCAGCTGCCCGTTCACATATTCTTCAGTCTGCTCCACGGCGATGTTCATGTACCCATCCAGACAAGCCAGGACACCTGAGCACAGATCATAAAAGCCCATTACAATACCTGTTCTCTAGGGTGTGTCCCAGCTTTC
>TU124965
attttataaacaaattgtcatttaattaaatttcagGTGGTTACATCAACTACCAATTGAAGTTGGAAACACAAAGTAAACTCCAGGGCATTTATTCACCACTGTGCCAGACCATGAGCTGCACTGGAACACAAATCGACCCCAGCCGAGTCCGTCAATTCACATCCTCGCAGGGGACAGCTATACTGTGCAGCCCCCCGAAAGGAGCTCTGCAATGAACATTTGTTTCATTCAGTTTGTTCTTAAAATGTTCACCTCAGCTTTTGTATGGTAGATAATACTCACTTTgataacatttcaaaatcagaATGGATGATGGAGGGGGAAAGCAAGGAgaagggaaaaagaaacaaaaaaaactcccGATCGTACATGaactaaaaacataacaaaaaagtaaatcaaacaaagcaTCCATGTCACATCTTCCTCTTTTGAGTACTTATGTATAACACTGGGGAGAAAGGAAAAGACAGAATTagtcaaattatgtatttgatgCCTACACTTTAATACTTAGTATTACCAATACAGCAGAcctcaaaagcaaacaaagctgAGGTTCTGGTAAATAGCCTTATTAAAGCATTATTGttggaattaaacaaatgacaTTTAAAGTCAGTCTGTAAatcagtctttttttgttttgtttatatataatgaaaaatgataCTTTGCCAGTCAccccccccccccctttactGATGCACACTGATCTGGATTCACATTACAATGTTAGTGTCAAATTAAGTTACatacaatatgtacaatttAGCCTAGAGTCAAGATTTTTTTGGTTTACAGGTCAGTTTATTGTACCAATAGCAAAAGCAGTTTTTGCAattcatattttccatttcaattgaGAACAGATTTTACAAAAACTCTGAAGCAgactaaaatgttaaaaatacatgcagAACATACAATTGTATACCAGCAGTCACCCTAAGCTTACCAACAttttttgaattgaaaaagtcACCAGATTTTCTGTTCAAGCAAAAGTTCATGGTCTTCGTGAGCTTTTAAAATCCCTACCATTGTTTCCTCGCAGAAAAGCATCTCCATACTTGTTCTTCAGCTGCCCGTTCACATATTCTTCAGTCTGCTCCACGGCGATGTTCATGTACCCATCCAGACAAGCCAGGACACCTGAGCACAGATCATAAAAGCCCATTACAATACCTGTTCTCTAGGGTGTGTCCCAGCTTTC
>TU124967
attttataaacaaattgtcatttaattaaatttcagGTGGTTACATCAACTACCAATTGAAGTTGGAAACACAAAGTAAACTCCAGGGCATTTATTCACCACTGTGCCAGACCATGAGCTGCACTGGAACACAAATCGACCCCAGCCGAGTCCGTCAATTCACATCCTCGCAGGGGACAGCTATACTGTGCAGCCCCCCGAAAGGAGCTCTGCAATGAACATTTGTTTCATTCAGTTTGTTCTTAAAATGTTCACCTCAGCTTTTGTATGGTAGATAATACTCACTTTgataacatttcaaaatcagaATGGATGATGGAGGGGGAAAGCAAGGAgaagggaaaaagaaacaaaaaaaactcccGATCGTACATGaactaaaaacataacaaaaaagtaaatcaaacaaagcaTCCATGTCACATCTTCCTCTTTTGAGTACTTATGTATAACATTGTTTCCTCGCAGAAAAGCATCTCCATACTTGTTCTTCAGCTGCCCGTTCACATATTCTTCAGTCTGCTCCACGGCGATGTTCATGTACCCATCCAGACAAGCCAGGACACCTTGTAATCCACCCCGGAGTTGAGCTTCACCACCACCGGCCTCCCGATGATCTGCTTCAGAAAGTCACTGGGCGTTTGCTTTCGGAGACTCATTTTAGATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU124964 False 1215 lncRNA 0.37 2 18628322 18629571
TU124965 True 1219 lncRNA 0.37 2 18628322 18629571
TU124967 False 667 lncRNA 0.42 3 18628322 18630144

Neighbor

gene id symbol gene type direction distance location
AMCG00015726 slc10a7,LOC106591891 coding upstream 170152 18452377 ~ 18458170 (+)
AMCG00015715 prmt9 coding upstream 559647 18057882 ~ 18068675 (+)
AMCG00015714 nr3c2,mra,mrb coding upstream 675253 17945489 ~ 17953069 (+)
AMCG00015716 nr3c2,LOC107550687,LOC107742541,LOC107670737 coding upstream 708840 17890492 ~ 17919482 (+)
AMCG00015709 lrba,LOC107598261 coding upstream 1180661 17416375 ~ 17447661 (+)
AMCG00015728 NA coding downstream 47674 18677818 ~ 18682808 (+)
AMCG00015727 NA coding downstream 59594 18689738 ~ 18716514 (+)
AMCG00015731 NA coding downstream 175945 18806089 ~ 18828015 (+)
AMCG00015734 anapc10,LOC107550153,LOC107564421 coding downstream 210502 18840646 ~ 18851278 (+)
AMCG00015736 frem3,LOC106610210,LOC106610213 coding downstream 427918 19058062 ~ 19063854 (+)
G100005 NA non-coding upstream 330018 18297039 ~ 18298304 (+)
G99932 NA non-coding upstream 671692 17954485 ~ 17956630 (+)
G99934 NA non-coding upstream 694994 17932999 ~ 17933328 (+)
G99933 NA non-coding upstream 790422 17837617 ~ 17837900 (+)
G99915 NA non-coding upstream 1027414 17600703 ~ 17600908 (+)
G100082 NA non-coding downstream 127918 18758062 ~ 18844449 (+)
G100143 NA non-coding downstream 490684 19120828 ~ 19125504 (+)
G100145 NA non-coding downstream 502920 19133064 ~ 19167834 (+)
G100232 NA non-coding downstream 1082743 19712887 ~ 19713244 (+)
G100241 NA non-coding downstream 1096428 19726572 ~ 19782763 (+)
G100007 NA other upstream 302418 18320056 ~ 18325904 (+)
AMCG00015703 rps3a,LOC106592945 other upstream 1496547 17098459 ~ 17131775 (+)
AMCG00015687 NA other upstream 2129791 16494692 ~ 16498531 (+)
AMCG00015682 NA other upstream 2170480 16433443 ~ 16457842 (+)
G99624 NA other upstream 2496935 16131044 ~ 16131387 (+)
AMCG00015725 smad1 other downstream 114743 18744887 ~ 18771966 (+)
G100338 herc3 other downstream 1637263 20267407 ~ 20268285 (+)
AMCG00015796 hspa12b,LOC107583310,LOC107697252,LOC107721672 other downstream 4048693 22678837 ~ 22683895 (+)
G101061 NA other downstream 6234945 24865089 ~ 24865552 (+)
G101248 NA other downstream 7633771 26263915 ~ 26264308 (+)

Expression


Co-expression Network