G100241


Basic Information

Item Value
gene id G100241
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 19726572 ~ 19782763 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU125231
tgcttttttattgtctAATTGCTACATCCCTtatctaaaaaagaaaattgttctacttgtttttctttgcccTGTTAAAATAACACAGGtctgtattttccattttctactATTTCGCTTTATCTATTTCCAGAAATGTCAAGTGAGAAAAGTTTATGTCTCCTGTTACTTCCACCTTTTCCTGGAGCGCTCTCCTAACAGTGAGGCTTGGATTTCACTCTTCATACTGagTTGTCTGAGTGCTGACATGCCTATTACTGAAGCAAACCAGAATTTAATAGAAATGCAGATCTTCCTGAACAAAAGCCTGAGCTATTTTAACGTAagttac
>TU125233
tgcttttttattgtctAATTGCTACATCCCTtatctaaaaaagaaaattgttctacttgtttttctttgcccTGTTAAAATAACACAGGtctgtattttccattttctactATTTCGCTTTATCTATTTCCAGAAATGTCAAGTGAGAAAAGTTTATGTCTCCTGTTACTTCCACCTTTTCCTGGAGCGCTCTCCTAACAGTGAGGCTTGGATTTCACTCTTCATACTGagTTGTCTGAGTGCTGACATGCCTATTACTGAAGCAAACCAGAATTTAATAGAAATGCAGATCTTCCTGAACAAAAGCCTGAGCTATTTTAACctgcagtccaggcctggcagagcatcaccagggaagaaacc
>TU125234
ctaaattgcccctgtcccaacttttgtGGAACGTGTTGcttgcatcaatttcaaaataaacgtttaccttcaaaaaacgatgcagttgattaggtaaaacatcaaataccttgtcttttatgttttttgtttaaatacaagtcaaagtacatttacaaatcactcctctttgtttttattagcattttccatactgtcccaactttttcggaattggggttgtacatGGCTGTAAAAAGGAAATGTCAAGTGAGAAAAGTTTATGTCTCCTGTTACTTCCACCTTTTCCTGGAGCGCTCTCCTAACAGTGAGGCTTGGATTTCACTCTTCATACTGagTTGTCTGAGTGCTGACATGCCTATTACTGAAGCAAACCAGAATTTAATAGAAATGCAGATCTTCCTGAACAAAAGCCTGAGCTATTTTAACatgtgcaagttacccatgccatgggcactgacacacccccataccatgacggacgctggcttttggacctgaaactgataacagcttggatggtccttttcctctttggcccgg
>TU125235
ctaaattgcccctgtcccaacttttgtGGAACGTGTTGcttgcatcaatttcaaaataaacgtttaccttcaaaaaacgatgcagttgattaggtaaaacatcaaataccttgtcttttatgttttttgtttaaatacaagtcaaagtacatttacaaatcactcctctttgtttttattagcattttccatactgtcccaactttttcggaattggggttgtacatGGCTGTAAAAAGGAAATGTCAAGTGAGAAAAGTTTATGTCTCCTGTTACTTCCACCTTTTCCTGGAGCGCTCTCCTAACAGTGAGGCTTGGATTTCACTCTTCATACTGagTTGTCTGAGTGCTGACATGCCTATTACTGAAGCAAACCAGAATTTAATAGAAATGCAGATCTTCCTGAACAAAAGCCTGAGCTATTTTAACTAATCTAATG

Function

GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system
ko04976 Bile secretion
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU125231 False 331 lncRNA 0.36 2 19728656 19729528
TU125233 False 363 lncRNA 0.39 3 19728656 19782763
TU125234 True 543 lncRNA 0.40 4 19726572 19730564
TU125235 False 439 lncRNA 0.36 4 19726572 19775290

Neighbor

gene id symbol gene type direction distance location
AMCG00015744 NA coding upstream 21478 19704423 ~ 19705094 (+)
AMCG00015742 NA coding upstream 54676 19640046 ~ 19671896 (+)
AMCG00015741 NA coding upstream 213647 19448906 ~ 19512925 (+)
AMCG00015737 frem3,LOC107725184 coding upstream 617584 19100220 ~ 19108988 (+)
AMCG00015736 frem3,LOC106610210,LOC106610213 coding upstream 662718 19058062 ~ 19063854 (+)
AMCG00015745 rnf150,LOC107729769 coding downstream 30827 19813590 ~ 19821835 (+)
AMCG00015748 tbc1d9 coding downstream 85106 19867869 ~ 19905638 (+)
AMCG00015747 ucp1,LOC107703842,LOC106610252 coding downstream 177781 19960544 ~ 19968342 (+)
AMCG00015756 NA coding downstream 252585 20035348 ~ 20038407 (+)
AMCG00015754 NA coding downstream 327942 20110705 ~ 20111939 (+)
G100232 NA non-coding upstream 13328 19712887 ~ 19713244 (+)
G100145 NA non-coding upstream 558738 19133064 ~ 19167834 (+)
G100143 NA non-coding upstream 601068 19120828 ~ 19125504 (+)
G100082 NA non-coding upstream 882123 18758062 ~ 18844449 (+)
G100046 NA non-coding upstream 1096428 18628322 ~ 18630144 (+)
G100349 NA non-coding downstream 541847 20324610 ~ 20327167 (+)
G100461 NA non-coding downstream 996583 20779346 ~ 20780467 (+)
G100483 NA non-coding downstream 1045565 20828328 ~ 20828614 (+)
G100502 NA non-coding downstream 1281287 21064050 ~ 21065385 (+)
G100507 NA non-coding downstream 1523843 21306606 ~ 21310605 (+)
AMCG00015725 smad1 other upstream 954606 18744887 ~ 18771966 (+)
G100007 NA other upstream 1400668 18320056 ~ 18325904 (+)
AMCG00015703 rps3a,LOC106592945 other upstream 2594797 17098459 ~ 17131775 (+)
AMCG00015687 NA other upstream 3228041 16494692 ~ 16498531 (+)
AMCG00015682 NA other upstream 3268730 16433443 ~ 16457842 (+)
G100338 herc3 other downstream 484644 20267407 ~ 20268285 (+)
AMCG00015796 hspa12b,LOC107583310,LOC107697252,LOC107721672 other downstream 2896074 22678837 ~ 22683895 (+)
G101061 NA other downstream 5082326 24865089 ~ 24865552 (+)
G101248 NA other downstream 6481152 26263915 ~ 26264308 (+)
G101275 NA other downstream 6590390 26373153 ~ 26377699 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G98005 LOC103373964,LOC107081966 unknown NC_053120.1 CM020917.1 24749001 ~ 24755967 (-)
striped catfish (Pangasianodon hypophthalmus) G298890 LOC108258199 non-coding NC_047613.1 CM018559.1 20705477 ~ 20730010 (-)
striped catfish (Pangasianodon hypophthalmus) G111911 NA non-coding NC_047601.1 CM018547.1 9255722 ~ 9257981 (-)