G100349


Basic Information

Item Value
gene id G100349
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 20324610 ~ 20327167 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU125368
tcaAGGAATCAACCAAAAACTTTAATGGAAGTGAATCAAGAATAATGTCTTTTACATTGATGAAGACAAGCTCATTGTTACACCCTGCAACAGTAATAGCCTCACTGTATGACTCAACAGTATTCAAATGAGCAGCAATGTGCTAAAGAGCAGCAAGTTGGTTTTctaataaattaaatccatatGTATTAATAGAGTCTAAAATATAAgggattaaaatgtatttataacacattaaaaacaaacaaacaacacaattaatTGTGCAggggtgggagagggagaacacaaattaaatgtgcagtaaaaacatgacaaaaataaattacacaagtATATAattgtctatctatctatctatctatctatctatctatctatctatctatctgcttaatacacatatatacacacaatagaCTTAAATGCCATGgcaacaattatatattttatatccaCACTAAAGTTTTCTACTGGTTTTAAAATTCAGTATTTTGAGTAATAGATGATTTACAAATTGTCATAATTAAGgtcattagaaaaataaaaaataaaccttgaaCAAGTTTCTcagcaaaacaatatatacaaataaaatacttttctgtcAAGATAGTATTACAAATATCCTAGAAGTTACAACCCACTTGTCAATAAGACTATTTTGTTAATCTTAGTTATATTAATTGCACAGTTCTGTCCTTATATTTTCCAGAAACCTCTGTTGTGATTGATGGCTTCAATAAGCTTTATTTTCAGTCTCTCTTTGCTGGAGTATATGGGCAGTAATAACAGGTTGTGGCAGGTCAGGGCTTCAGGAAAGTGATTTTGAGTGAAATTATTCAAGACTTGAATTGTCATCTGAATGCACTGCATGCCTAATATAGGTGGTCGGTCACATCCCGTCAGgaacactgaaataaaagagcgcttgttattattttttaaattgtgttggtGTTTGCTAAcctcttaaaaaatgaatgttttttctgGTTTATACAAATTCTGTAATCcttgtttcatatttttatgtattaaaagaaatcagcaatatcaaatgtatataattatcaaatacatctttaaaaaatgcattctggGGTAAAACAATAGTCTGACCTTTCTGGTGGCTTATTATATGtacatctttattattattattattattattagtagtagtagtagtagtagtagtagtagtagtattttatatattagttagcccctgtataaataattagcaaattacaaatgcattttatgaatGATATTTGTAAGTAAAATcgcacagttaaaaaaaaaaaaaaaagatattgccctttttatttctgaaagatgaattgatttgtatttgtgaaaacAGAATAAAGTACTAACCTCTAACTCTCAGTAACCACAACTTTGATAAAATCTGGGCATTttcaaaccaacaaataaataaataaatattgcatttgtattattttgcaaatgtgtCCATAATCACACTCTTGCACTTTTATCACTAGTGAAGCTAAGCTAATCTTGAATTATAACATGATACAAGACAAATTCCTGAGGAAGCATGCcttcaaaagcacagaaataagaacacagacacacataattTTTATTTACACTATAGTAGGGGTCATAGTAGTATAGTAGTTTGTGAAAGTATATTGCACTGAGAGTCTAGCCCAAGTCTGATTTTTGAAGCTGttcagcaattaaaaatattatattacaagCCAGACAGGTATAGCAGCATATTGGAATATGTAAGCAAATGACAACTGAGTCATGGGCTGCTTGTAGGAAAGccagaaacaacaaaaagtaattatgaaaaaataaccTTTAATACGTACACAGGAAGGCTTTCTTTTGTTCTGGTGTCAGTTCATCAAACACTTCCCAAAACATGATTATATTAGCGTGGTTTGCATGATATTGACCTCCATAAAGTGTATTCtTTTTTCAGAGTGTCCCAGTCATAGTCTTCCTTCCCTACCATTATCTCCATCAGTTCCTGGGGTTGAAAGATCCCAACTACTTTCGCATCACAGACTTTGTAAAAACCTTCCTTGAACTCTTCAAAAAGATTCTTCACAGATAGGTTGAATACGTAATCCACATAGGCATCAACAAATTGCTCCCtcaaaaatgaaagacaaacgATCTCTTTTAAAAATCTGTAGTTTTCATACCAGCACACtgttgtcatgccaataaag

Function

GO: NA

KEGG:

id description
ko05164 Influenza A
ko05162 Measles

RNA

RNA id representative length rna type GC content exon number start site end site
TU125368 True 2219 lncRNA 0.31 2 20324610 20327167

Neighbor

gene id symbol gene type direction distance location
AMCG00015759 NA coding upstream 24752 20274943 ~ 20299858 (+)
AMCG00015758 NA coding upstream 99521 20184189 ~ 20225089 (+)
AMCG00015757 NA coding upstream 178980 20136688 ~ 20145630 (+)
AMCG00015754 NA coding upstream 212671 20110705 ~ 20111939 (+)
AMCG00015756 NA coding upstream 286203 20035348 ~ 20038407 (+)
AMCG00015765 NA coding downstream 157720 20484887 ~ 20501432 (+)
AMCG00015768 LOC106565696 coding downstream 228708 20555875 ~ 20556255 (+)
AMCG00015766 NA coding downstream 259703 20586870 ~ 20619770 (+)
AMCG00015767 NA coding downstream 295626 20622793 ~ 20656527 (+)
AMCG00015773 smyd5 coding downstream 433663 20760830 ~ 20774620 (+)
G100241 NA non-coding upstream 541847 19726572 ~ 19782763 (+)
G100232 NA non-coding upstream 611366 19712887 ~ 19713244 (+)
G100145 NA non-coding upstream 1156776 19133064 ~ 19167834 (+)
G100143 NA non-coding upstream 1199106 19120828 ~ 19125504 (+)
G100082 NA non-coding upstream 1480161 18758062 ~ 18844449 (+)
G100461 NA non-coding downstream 452179 20779346 ~ 20780467 (+)
G100483 NA non-coding downstream 501161 20828328 ~ 20828614 (+)
G100502 NA non-coding downstream 736883 21064050 ~ 21065385 (+)
G100507 NA non-coding downstream 979439 21306606 ~ 21310605 (+)
G100568 NA non-coding downstream 1487204 21814371 ~ 21814715 (+)
G100338 herc3 other upstream 56325 20267407 ~ 20268285 (+)
AMCG00015725 smad1 other upstream 1552644 18744887 ~ 18771966 (+)
G100007 NA other upstream 1998706 18320056 ~ 18325904 (+)
AMCG00015703 rps3a,LOC106592945 other upstream 3192835 17098459 ~ 17131775 (+)
AMCG00015687 NA other upstream 3826079 16494692 ~ 16498531 (+)
AMCG00015796 hspa12b,LOC107583310,LOC107697252,LOC107721672 other downstream 2351670 22678837 ~ 22683895 (+)
G101061 NA other downstream 4537922 24865089 ~ 24865552 (+)
G101248 NA other downstream 5936748 26263915 ~ 26264308 (+)
G101275 NA other downstream 6045986 26373153 ~ 26377699 (+)
G101400 NA other downstream 7563385 27890552 ~ 27992014 (+)

Expression


Co-expression Network