G100461


Basic Information

Item Value
gene id G100461
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 20779346 ~ 20780467 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU125492
CTGGCGtgcatggtattgaccaatggaaaggacgttactgtccgtcatcattcctagagattatatattttttacccaaccacagaccatggctctatgaatatctagccaatccaatgaaatctttttaatgacgtgcagaaacccagagaagggagtagcactgaagaggaagaggagtatgaagagcaataatgtgtcaccctataacaccccttctcatgtgttagtttagtgcatttatacagatccccattagctgccatgttattgcatatgtgattgattaatttgaaaaagatgctcccgcacactgtctctactagcaagtgttataattcaatagactgcaatgttttgatcaaagatCTTATAACatttgcaagtagaaactgtgtgggagcaattagcttttgtaatggtgattgattaattacctgaataaatgccacattttcaccacacatttacatacCCTCATGtatttctggtgatgtttgcctttggctggtaaaaataccaagtggctggtaagttttttccttctaccagacacagtggctagtagccaaaaaagttaattttatcccctgatcagtcctgtgttccaatggcaggctcaaaatggccagaaacagagaactttcttctgaaactcatcagtctattcttgttctgagaaatgaaggttATTCCATgagagaaattgccaagaaactgaagatctcgtacaaacACTGTGTACtcctcccttcacagaacagtgcaaactggctctaaccagaatagaaagaggagtggcaGGCcctggtgcacaactgagcaagaggacaaatacattagagtgtctagtttgcgAAAcggacgcctcacaggtcctcaactggcagcttcattaaatagtacccgcaaaacaccagtctcaacatcaacagtgaagaggcgactacgggatgctggccttctatgcagagttgcaaagaaaaagccatatctcagtctggagaataaaaataaaagattaagaacacagacactggacagaggaagactggaaaaacagtgttatggacagacaaatctaagtttgaggtgtttggatcacaaagaagaacattcgtg

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU125492 True 1122 lncRNA 0.41 1 20779346 20780467

Neighbor

gene id symbol gene type direction distance location
AMCG00015773 smyd5 coding upstream 4726 20760830 ~ 20774620 (+)
AMCG00015767 NA coding upstream 122819 20622793 ~ 20656527 (+)
AMCG00015766 NA coding upstream 159576 20586870 ~ 20619770 (+)
AMCG00015768 LOC106565696 coding upstream 223091 20555875 ~ 20556255 (+)
AMCG00015765 NA coding upstream 277914 20484887 ~ 20501432 (+)
AMCG00015775 NA coding downstream 22230 20802697 ~ 20802933 (+)
AMCG00015774 NA coding downstream 22530 20802997 ~ 20803854 (+)
AMCG00015779 NA coding downstream 266303 21046770 ~ 21053142 (+)
AMCG00015781 atrn coding downstream 376687 21157154 ~ 21224579 (+)
AMCG00015782 NA coding downstream 446813 21227280 ~ 21229655 (+)
G100349 NA non-coding upstream 452179 20324610 ~ 20327167 (+)
G100241 NA non-coding upstream 996583 19726572 ~ 19782763 (+)
G100232 NA non-coding upstream 1066102 19712887 ~ 19713244 (+)
G100145 NA non-coding upstream 1611512 19133064 ~ 19167834 (+)
G100143 NA non-coding upstream 1653842 19120828 ~ 19125504 (+)
G100483 NA non-coding downstream 47861 20828328 ~ 20828614 (+)
G100502 NA non-coding downstream 283583 21064050 ~ 21065385 (+)
G100507 NA non-coding downstream 526139 21306606 ~ 21310605 (+)
G100568 NA non-coding downstream 1033904 21814371 ~ 21814715 (+)
G100639 NA non-coding downstream 1508156 22288623 ~ 22288848 (+)
G100338 herc3 other upstream 511061 20267407 ~ 20268285 (+)
AMCG00015725 smad1 other upstream 2007380 18744887 ~ 18771966 (+)
G100007 NA other upstream 2453442 18320056 ~ 18325904 (+)
AMCG00015703 rps3a,LOC106592945 other upstream 3647571 17098459 ~ 17131775 (+)
AMCG00015687 NA other upstream 4280815 16494692 ~ 16498531 (+)
AMCG00015796 hspa12b,LOC107583310,LOC107697252,LOC107721672 other downstream 1898370 22678837 ~ 22683895 (+)
G101061 NA other downstream 4084622 24865089 ~ 24865552 (+)
G101248 NA other downstream 5483448 26263915 ~ 26264308 (+)
G101275 NA other downstream 5592686 26373153 ~ 26377699 (+)
G101400 NA other downstream 7110085 27890552 ~ 27992014 (+)

Expression


Co-expression Network