G100641


Basic Information

Item Value
gene id G100641
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 22446374 ~ 22449216 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU125697
agTCTATAAAATTGCCAAATACATTAAGGATCACAGAAGACAAACCAACGAACAGACAATAACAAACATTCATATTTGAACTAATTTAAATGCTGATctgtaaaaagaaataaaatattatgtacAAATGGACAgataaacacactcacacacacagctatccACAAAACACAGAATGTGGTCACATGGCACCAAATATTAACATACCTCACAagtgcttctgttttttgttttctttttaattaatattaactgaatgtaataaaaaaaatattaacatttaaacactgtttacaatataatgaaaatcCATATCATactaaatataacaatatttaccAACACACTTTATTTATACTAAATCTCTATtctgaaatataacaaaaatagcacttaaaataatatttattattacatcaccaacaacagcaacagcgaacatcaacaacaaaaataataacataataataataataataataataataataataataataataggttattagaaaaacaaaacaatacaaatatgttacTCTATTACTCGCTAAAATGGGTCCGAAAGCCTCCTCACCCACAGTTCTTTGCTCTCAAGCCCACAAATGTATTTCCCAGCAAAAATATCTAATCTCACTTCCCCTTGGAAACCACTGTAGCAATTTCAAAAATTCTGTATGTGAAAACTGTACAAGAGGAGCAGCAGaggaatgtgttttgaaatgcaacGTTGTCAGTGGTGTTCATCTCGGATTTGACTTTCACTCTAAGCATTGACTTTCTGCAAACATGGAACCATTTAAACCCCAACACTTTTCTGCTCCATCTCACAGAAGGCACCATGCTTCCAGGGATACATGTATTCTTCTGTTTTGTCCTGTTAAATATGACCTGGTTGGAGTTTTCAAAGTAATTAATCAATATCTAGCTCTTgcgtcatatatatatatatatatatatatatgatgtcaCTGTTTGTGAGTCCATTCTCTTGATTGTAAAATACCTCGTTTTGAGagacacattttgaaattaaatggttACGTACGTGCCGTGTGGgatttaaacatgttactgaAGCTCCTGGGGCTGTTTTCACAAAAcctgattagcactagtcttctacaatattatttttgttccaaAACTAtagctaatcaaggtctgtttGAATACGTTTAGATTATGGTGCTGAAGTATGTAAAACTTTACAAACACACTGTTATAAACAAAGGTTTTAAACAACAGGAGTCATCTGTCTTCATAAATCCCCATACTGAATTATAAAGATCAAGTAAAAAGTTTTAGAAGGGCAGTCCATGGAAACAAGTTCAAAGAAtttcaagaaaattaaaaatatttgttaaaatattggATAAACCTTTCAgggttttaaagaaaacatataatGTTTAATGAACCTTAATAGGACATTAAGACATAGTTGTCTCTAAATTGTTTACATTGATCCTGTCTCCTCACATTAATTCACAAATTCGTCATTCACTGCACCCTGACTTTTCTTAAGACATAGCTTAATTAGGAATTCTATCGGTCTCTTGCTGTCAGTGAAAGAGATCATCTTAGTGCTAATTGGCATTGTGTTTGTCAAGTTCAGCAGAGAGGAAAAACTGTATATTacactgtatctgtatctgtctaGTCCCACTGagagaaaagtgaaaaaataaacattactgaaaggtttaaattgtttaaatcacagctctttgaacattttcactcagTTTCGATGCAAATAAAACTGTATCAATGGCTCTGTTCTCAGAttcatttaatctgttttgtttatatttattataatgatgtatgagtttgtaatttacagtatgaaataagaatgaaaaaggTGTTTATGTGGTCTAGGTGTCATATATGCTTTGGGTTCTTGCAGTGTTCATGGATGACTAGAGAAACAGGCCAATTTCACACTAAATTTCAACGAAACTGTGAGTAAATGATGCAGACCGCAGTCGTTTTACCAAACTGCTTCCATTAATCGACAGATACATAATCCTTGATGGTATCTTAGCAGCAGTTACAAAGCAGATAAAAATATTCTTTacatactaaaacaaaacaaaacaacaacaaaattcaGACAAGAATTACCTGCACACACCCCACCCTGATTTGATTTTCTCTCATTGCTCTCTCATTTTACTTGATATCCTCCTGAATAATGTTCTCTTCTTCTTGACAAACCAGCCTTGAATTACAATTAAACCAGGGCCATATTACTTAAATAACTAGTGATTAACCCCAATATGtctgttagtattattattattatttaactattattattatcatgggTAGCATAGTATGGTTTCAAACTAGAATGATACCACTGATCTAATGAACTATAAATCAAGGGAGTAGTAAGATGCATATTCAAGCAGAATATGTCAACAAGGTCTTTATGGCATTGCTTCAGCAGTGTATTGGCATGAGTCCCCTTTTAAAAATGCGGTTGACAATGGATAAGAATTGCCTCCCTTGCATTTTGGCATTATCTCCTTCCCCCAACGGTTtcatataatttgtaatttgaacCAACTGGGACTGATGGAAATGGGGGATTGGTGCATAATCTCGCAAAGTCATTACTGATGTAAAGGTTATGGAAATGTCTGAAAAATTACTGGACTTTTGTGGAGTTACAGATTGTTCACATTATCTCTTACccttaaaaatcataaaacacaaGGAATTTTGAATATGTggttgaaaaaactaaaaactgcaGATGTACAGTTCTTAAAATCTTTAAttgttaaactgaaaaacaatgcatatat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU125697 True 2822 lncRNA 0.32 2 22446374 22449216

Neighbor

gene id symbol gene type direction distance location
AMCG00015788 NA coding upstream 268117 22166231 ~ 22178257 (+)
AMCG00015787 NA coding upstream 300303 22103118 ~ 22146071 (+)
AMCG00015786 NA coding upstream 381015 22045949 ~ 22065359 (+)
AMCG00015782 NA coding upstream 1216719 21227280 ~ 21229655 (+)
AMCG00015781 atrn coding upstream 1221795 21157154 ~ 21224579 (+)
AMCG00015795 cct7,LOC102781788 coding downstream 211845 22661061 ~ 22664968 (+)
AMCG00015797 NA coding downstream 257972 22707188 ~ 22715143 (+)
AMCG00015794 NA coding downstream 308919 22758135 ~ 22767486 (+)
AMCG00015801 NA coding downstream 401588 22850804 ~ 22874803 (+)
AMCG00015807 NA coding downstream 445548 22894764 ~ 22907142 (+)
G100639 NA non-coding upstream 157526 22288623 ~ 22288848 (+)
G100568 NA non-coding upstream 631659 21814371 ~ 21814715 (+)
G100507 NA non-coding upstream 1135769 21306606 ~ 21310605 (+)
G100502 NA non-coding upstream 1380989 21064050 ~ 21065385 (+)
G100483 NA non-coding upstream 1617760 20828328 ~ 20828614 (+)
G100707 NA non-coding downstream 371285 22820501 ~ 22820703 (+)
G100709 NA non-coding downstream 386038 22835254 ~ 22923396 (+)
G100776 NA non-coding downstream 766835 23216051 ~ 23218316 (+)
G100801 NA non-coding downstream 834475 23283691 ~ 23284077 (+)
G100858 NA non-coding downstream 1313075 23762291 ~ 23762523 (+)
G100338 herc3 other upstream 2178089 20267407 ~ 20268285 (+)
AMCG00015725 smad1 other upstream 3674408 18744887 ~ 18771966 (+)
G100007 NA other upstream 4120470 18320056 ~ 18325904 (+)
AMCG00015703 rps3a,LOC106592945 other upstream 5314599 17098459 ~ 17131775 (+)
AMCG00015687 NA other upstream 5947843 16494692 ~ 16498531 (+)
AMCG00015796 hspa12b,LOC107583310,LOC107697252,LOC107721672 other downstream 229621 22678837 ~ 22683895 (+)
G101061 NA other downstream 2415873 24865089 ~ 24865552 (+)
G101248 NA other downstream 3814699 26263915 ~ 26264308 (+)
G101275 NA other downstream 3923937 26373153 ~ 26377699 (+)
G101400 NA other downstream 5441336 27890552 ~ 27992014 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location