G100776


Basic Information

Item Value
gene id G100776
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 23216051 ~ 23218316 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU125866
CCCAGAGATTCGCGattgtgagtgtttgtgtgtgtgtgtgtgtgtgcgtgtcagtatTTCACAGGAACTTCATTACAACGCAGTATTCATGTGCGATGCAAGCAGTCCCCCTTTCACTGTTCAGGTGGACTAAATGCAGACATGGCTTTGCAGAACTGTCACAGTCCCTAAAGTACCCGGAGTTTACAGCCACAGCACCAATGCATTTGAAGACCAGCTCTCCcaaactcaaaataaaatatatagggCCTATAACTATATGtgattaattttttaatgtgaatctTTTAGGGCATTAAGTAATCATTAATTCTTAATTTATCCATTGGTGGTTGGGTTGAAGgtctgatttaatctgggcctaAGTGACTGAGAACTCAATCTGGAACAAGAAACAGAAGACTTTGACATTGAAGGTTTGGAGGTCCACTCAGCCAGATGTGCTGGATAAAAAATAAGCAAGCAGGGGACATAGAAAAACTTTCATTGGGTATTCAAACAACACACAATACTCCCTTTGCCCTGGAAGCGACTGAGCAGCTATCCACTGTGGCCTGTGAGGGCTGCAGTGACACTgcagtgcgtgtgcgtgtgcgtgcgctATACATTCTAAACAAAAGCCAGAGAAAAgccttcccctctccctctgacTTGCATCCCAACTGACGTATTTTTATGCActttatttgatataattttGTTAAGATTTGTTGCTATTGGTTTGAAAGTTTGGGTGGTTTTACCAACGACTGCTCCAACACCAGTAAGATTGAATCCATTGACTCCATTGATGCAGATACCAAATATATAGTCATACTGGATTCAATTTCTTTAGGGAACCAGTCTAAGCAATTGTGAACAAAGCAATCCTGATGAGAGTCGGGGAGGGACAGCTGgaacagggacagggacagagttCTTTTGCGCTGCAGAATTGGAGGTGGAGAGCAGAGGGACACAACTACAGTCAAACACAATCATTGACTAAAGCAGTTTTCTCTTGGCATAATTATTCACTGAGGTTCATTCCTGCAGCTTTTAGATGACAGagatgtttctttcttcttttctgtctcGCTATTTCTCTGTACacttctctccctttctctgttATTCCCAATGCCAGAGAAATCCTCCGACTGACCAGTGAACTGTGACATCCTCGTTCCTGACAATCACGTCCCTCTGCTGTGACCTGATTGATGCACTGTGTTTCAGcgtaccccccccaccctgctctcGCTGTGACCGAAGAGTCCTATGTTCTCATTTTCCAACACCATCGCCACGCTACTCTGGTGCTGAACTCCGAGTCATTATCCTTAAACATCATCCATAATTCAACAGAGCTCAGCCATAAAATATTGACAGGTAGAAACCCAACAGAATCTACTTAAATCACTGCTCTTGTTTTCATCACAAGAGCAGTGTTTATGTATGAGCTATTTTAACTGTGATTCCCTCTTTTGTGCTCCTTTATTGCTGCCGTGAATAGTTTTGGGGATCGCATTTGGCTTGGAATTTGCTTTTCTGTCCTGTTACAAATTACATGGACCAGCTGAGATGGAATAAGATGGGGGACAGATGTACATTTATACAGATGGTCATATCTCACTCTGACACATCCAGAGTAGCATCGGCTGATGTTTTCTGTGCTGGACTCAGGTTGAAGTGAAACTTTCAGACAATTTCGATTGGCATTCCCTCCACTAGTATTGCAAACCATTTAAATCATAAAGAGGCTTTCATATTTCTAAAAGTCTTTAttccttttctatttctgttaCAATAAGGTGctactgtcttttttttttcaatatggaTTGAGCCCAATGAGATTGTGTTGTTCTGGGTTTAATTACATCAGTGTTCTTGCACACAGTGGAAGTTCTGTGTGTTGAGCCATATTCCATTGACATTAACCTAGTGATCTTTATTCATTGATTGGCACCAGCTACTCACAAACTACAGCTTTGTAAATATCTCGGTCTTTGCACAGTACCTCAATGTCTGTatgatgtgatttaaaaaaaaaaaatcaaaagaaaagtcTTTCTATATGCTTTACAATACCTTGTCCCATTAACAatttgcacttatttttttgctgtatgATGTTCTGTACATTCAGTTGAAAGAGGGTTTCTTTGTGTTCTGGCTAAAGAGAGCTGTTTTCATGCTCGGGCCATGGAAACCAagatattgtatataatatgtatgtatttttattcatatgcaTATAAATCTATATGTCTATGTATATGCA

Function

GO: NA

KEGG:

id description
ko04727 GABAergic synapse

RNA

RNA id representative length rna type GC content exon number start site end site
TU125866 True 2266 lncRNA 0.41 1 23216051 23218316

Neighbor

gene id symbol gene type direction distance location
AMCG00015815 vax2,LOC107572133,LOC107755639 coding upstream 35135 23175632 ~ 23180916 (+)
AMCG00015818 NA coding upstream 58789 23151053 ~ 23157262 (+)
AMCG00015817 NA coding upstream 70337 23135578 ~ 23145714 (+)
AMCG00015813 NA coding upstream 99268 23110272 ~ 23116783 (+)
AMCG00015810 NA coding upstream 236059 22976920 ~ 22979992 (+)
AMCG00015816 NA coding downstream 37774 23256090 ~ 23273675 (+)
AMCG00015814 tex261 coding downstream 57640 23275956 ~ 23281282 (+)
AMCG00015820 NA coding downstream 104843 23323159 ~ 23337368 (+)
AMCG00015827 LOC107677352,LOC107587099,LOC105028844 coding downstream 125362 23343678 ~ 23367384 (+)
AMCG00015826 NA coding downstream 149880 23368196 ~ 23392479 (+)
G100709 NA non-coding upstream 292655 22835254 ~ 22923396 (+)
G100707 NA non-coding upstream 395348 22820501 ~ 22820703 (+)
G100641 NA non-coding upstream 766835 22446374 ~ 22449216 (+)
G100639 NA non-coding upstream 927203 22288623 ~ 22288848 (+)
G100568 NA non-coding upstream 1401336 21814371 ~ 21814715 (+)
G100801 NA non-coding downstream 65375 23283691 ~ 23284077 (+)
G100858 NA non-coding downstream 543975 23762291 ~ 23762523 (+)
G100863 NA non-coding downstream 621482 23839798 ~ 23961637 (+)
G100903 NA non-coding downstream 852510 24070826 ~ 24156851 (+)
G100956 NA non-coding downstream 1266513 24484829 ~ 24549300 (+)
AMCG00015796 hspa12b,LOC107583310,LOC107697252,LOC107721672 other upstream 532156 22678837 ~ 22683895 (+)
G100338 herc3 other upstream 2947766 20267407 ~ 20268285 (+)
AMCG00015725 smad1 other upstream 4444085 18744887 ~ 18771966 (+)
G100007 NA other upstream 4890147 18320056 ~ 18325904 (+)
AMCG00015703 rps3a,LOC106592945 other upstream 6084276 17098459 ~ 17131775 (+)
G101061 NA other downstream 1646773 24865089 ~ 24865552 (+)
G101248 NA other downstream 3045599 26263915 ~ 26264308 (+)
G101275 NA other downstream 3154837 26373153 ~ 26377699 (+)
G101400 NA other downstream 4672236 27890552 ~ 27992014 (+)
AMCG00015901 NA other downstream 5359184 28577500 ~ 28580829 (+)

Expression


Co-expression Network