Gene
RNA
| Item | Value |
|---|---|
| gene id | G100998 |
| gene name | asah1,LOC102779657 |
| gene type | non-coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030132.1 |
| NCBI id | CM030132.1 |
| chromosome length | 32980562 |
| location | 24596474 ~ 24597817 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| symbol | description |
|---|---|
| asah1 | Enables N-acylsphingosine amidohydrolase activity; nuclear receptor binding activity; and transcription corepressor activity. Involved in several processes, including keratinocyte differentiation; negative regulation of nucleic acid-templated transcription; and sphingolipid metabolic process. Located in extracellular space; lysosome; and nucleus. Implicated in Farber lipogranulomatosis; sphingolipidosis; and spinal muscular atrophy with progressive myoclonic epilepsy. |
| description |
|---|
| PREDICTED: acid ceramidase-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU126137 | True | 840 | lncRNA | 0.35 | 4 | 24596474 | 24597817 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00015842 | NA | coding | upstream | 2433 | 24559125 ~ 24594041 (+) |
| AMCG00015836 | NA | coding | upstream | 143585 | 24442637 ~ 24452889 (+) |
| AMCG00015837 | NA | coding | upstream | 156641 | 24415124 ~ 24439833 (+) |
| AMCG00015835 | LOC107554395,LOC105892576,LOC104947301 | coding | upstream | 243056 | 24345624 ~ 24353418 (+) |
| AMCG00015834 | NA | coding | upstream | 290381 | 24290369 ~ 24306093 (+) |
| AMCG00015846 | NA | coding | downstream | 736199 | 25334016 ~ 25337276 (+) |
| AMCG00015845 | NA | coding | downstream | 776098 | 25373915 ~ 25405589 (+) |
| AMCG00015847 | sorbs2,LOC107707214 | coding | downstream | 1355542 | 25953359 ~ 25997861 (+) |
| AMCG00015849 | pdlim3,LOC108268957 | coding | downstream | 1420874 | 26018691 ~ 26030507 (+) |
| AMCG00015850 | NA | coding | downstream | 1440531 | 26038348 ~ 26040669 (+) |
| G100956 | NA | non-coding | upstream | 47174 | 24484829 ~ 24549300 (+) |
| G100962 | NA | non-coding | upstream | 59165 | 24528760 ~ 24537309 (+) |
| G100903 | NA | non-coding | upstream | 439623 | 24070826 ~ 24156851 (+) |
| G100863 | NA | non-coding | upstream | 634837 | 23839798 ~ 23961637 (+) |
| G100858 | NA | non-coding | upstream | 833951 | 23762291 ~ 23762523 (+) |
| G101029 | frg1,LOC107721419,LOC107702291,LOC107554393,LOC107656998,LOC107747397,LOC102296826 | non-coding | downstream | 5485 | 24603302 ~ 24608554 (+) |
| G101069 | NA | non-coding | downstream | 512981 | 25110798 ~ 25111058 (+) |
| G101087 | LOC107575789 | non-coding | downstream | 790244 | 25388061 ~ 25408536 (+) |
| G101088 | NA | non-coding | downstream | 810848 | 25408665 ~ 25409649 (+) |
| G101107 | NA | non-coding | downstream | 823073 | 25420890 ~ 25495919 (+) |
| AMCG00015796 | hspa12b,LOC107583310,LOC107697252,LOC107721672 | other | upstream | 1912579 | 22678837 ~ 22683895 (+) |
| G100338 | herc3 | other | upstream | 4328189 | 20267407 ~ 20268285 (+) |
| AMCG00015725 | smad1 | other | upstream | 5824508 | 18744887 ~ 18771966 (+) |
| G100007 | NA | other | upstream | 6270570 | 18320056 ~ 18325904 (+) |
| AMCG00015703 | rps3a,LOC106592945 | other | upstream | 7464699 | 17098459 ~ 17131775 (+) |
| G101061 | NA | other | downstream | 267272 | 24865089 ~ 24865552 (+) |
| G101248 | NA | other | downstream | 1666098 | 26263915 ~ 26264308 (+) |
| G101275 | NA | other | downstream | 1775336 | 26373153 ~ 26377699 (+) |
| G101400 | NA | other | downstream | 3292735 | 27890552 ~ 27992014 (+) |
| AMCG00015901 | NA | other | downstream | 3979683 | 28577500 ~ 28580829 (+) |
