G101088


Basic Information

Item Value
gene id G101088
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 25408665 ~ 25409649 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU126239
ggatcaaatacttttttccctcactgtgtatatatatatatatatatatgtgtgtgtgaactgtTGCTGCAAGATCATAAGAGAAGATTGACAGATATGAAGAGGGAACTGAGGGAGCTTGTGAAGTTCTTGTGGGCAGGGTTTGGAACAGACCCTCAGTACAACTGGAAGTGTATTTGGGACATGTCACATTCGATCTTCACATACTCCAACTTAATTAAGCTGGTATAGAGTTACTGTGACACATCCACATTAGCTGCCTGCTGTTTAACtcttgattttagtttttaaaataagtgcaCATATCCTTGGGGCATTTGAATGAACCATAGCCATTATATAATcgtaatttaatgttttttctaccATGCAATTAAATGAGGTCTCATATACactgctttttaaatgattgtaagTGATCATGTGGGCTTTGACAAGGTTCTATCTGTGAAGTTTATGGATGTGCCTACATTGGAATAAAGCACTGGACCCACCATTATTTATCATAAAATGGCAAGGGttaaaccacttttttttttttttttttattatacgaAAACCATCATTCTGCACATCTGAAATAGACAAAACAATGTGACCAGGTATCTAAGATTGGAAGAACATGCACTAAACCACCAGTGAAggaacacaatttaaaacattggGTCTGTGAATCACATTGCACAATGTGTATGTCCTTGGGAAACGTTGCTATGTTATATATCTTTTTCTATGATCACTTGTCTTTATAAACCTATTGGAGGTCAAAGTtctatgtagttatttattagAGCATATTATGTTTACCCTGATGCAGTATGTTATCAATTACTTGACAGCAGCTTTTGAAGTTTACAGCATATTATGAATCATTAACTCAATACAAAGAAAGGAACATGTATTACTGGCACATCCTATAAGAATTGTATGAACTGCATATTGACTAAAACATTGGttgtagtttaaataaaaatacttttggaTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU126239 True 985 lncRNA 0.34 1 25408665 25409649

Neighbor

gene id symbol gene type direction distance location
AMCG00015845 NA coding upstream 3076 25373915 ~ 25405589 (+)
AMCG00015846 NA coding upstream 71389 25334016 ~ 25337276 (+)
AMCG00015842 NA coding upstream 814624 24559125 ~ 24594041 (+)
AMCG00015836 NA coding upstream 955776 24442637 ~ 24452889 (+)
AMCG00015837 NA coding upstream 968832 24415124 ~ 24439833 (+)
AMCG00015847 sorbs2,LOC107707214 coding downstream 543710 25953359 ~ 25997861 (+)
AMCG00015849 pdlim3,LOC108268957 coding downstream 609042 26018691 ~ 26030507 (+)
AMCG00015850 NA coding downstream 628699 26038348 ~ 26040669 (+)
AMCG00015848 LOC107579280 coding downstream 636457 26046106 ~ 26055409 (+)
AMCG00015853 NA coding downstream 646453 26056102 ~ 26061085 (+)
G101087 LOC107575789 non-coding upstream 129 25388061 ~ 25408536 (+)
G101069 NA non-coding upstream 297607 25110798 ~ 25111058 (+)
G101029 frg1,LOC107721419,LOC107702291,LOC107554393,LOC107656998,LOC107747397,LOC102296826 non-coding upstream 800111 24603302 ~ 24608554 (+)
G100998 asah1,LOC102779657 non-coding upstream 810848 24596474 ~ 24597817 (+)
G100956 NA non-coding upstream 859365 24484829 ~ 24549300 (+)
G101107 NA non-coding downstream 11241 25420890 ~ 25495919 (+)
G101116 NA non-coding downstream 258179 25667828 ~ 25725578 (+)
G101270 NA non-coding downstream 954646 26364295 ~ 26365059 (+)
G101271 NA non-coding downstream 957948 26367597 ~ 26367905 (+)
G101272 NA non-coding downstream 959836 26369485 ~ 26369703 (+)
G101061 NA other upstream 543113 24865089 ~ 24865552 (+)
AMCG00015796 hspa12b,LOC107583310,LOC107697252,LOC107721672 other upstream 2724770 22678837 ~ 22683895 (+)
G100338 herc3 other upstream 5140380 20267407 ~ 20268285 (+)
AMCG00015725 smad1 other upstream 6636699 18744887 ~ 18771966 (+)
G100007 NA other upstream 7082761 18320056 ~ 18325904 (+)
G101248 NA other downstream 854266 26263915 ~ 26264308 (+)
G101275 NA other downstream 963504 26373153 ~ 26377699 (+)
G101400 NA other downstream 2480903 27890552 ~ 27992014 (+)
AMCG00015901 NA other downstream 3167851 28577500 ~ 28580829 (+)
AMCG00015918 g3bp2,LOC106578160,LOC107714642,LOC106610282 other downstream 4214396 29624045 ~ 29652938 (+)

Expression


Co-expression Network