G101275


Basic Information

Item Value
gene id G101275
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 26373153 ~ 26377699 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU126474
CAGTGCAGCGGGAAGAATAAATCCATATAATAGGAAGCAAGAAGGTTTGGCTAGATTTAGGTGAGACAAACACTACAGGTAAAACTGCTCTAtgtaaaaacatactttttttttaataggcaGCATTTAAACACACCAAAACAGTTCACACAGTcacaaaaagacaagaaaaggtTTCTTAGATACATGCTTGATCTAGCAAATTAATTACATAGGAACAggtcttctgttttgtttctggtttttgagtttgtgattttgttttattttctgttttacattttggaacaatgtttttttcagcagcaaagacaaaaaataaaataaaatagaaaataaaacaaacaaacaaaccaaaaaatgcaCACGCTTTGGAGCCAGTTCTTTTGCAGCTCCTTCTTTAACTCATTGATCTTAGAACAGACAAAAGCCATGACACAATATAAGCCACACAAGACTCAAAGCATCTGCTGAGGCTTATATCCGCACAAGAATggctttaattaattttaccTGATGGGTGGATCACAGAGATCTAGGGTGCTTTTGTAACACGGGCATTCACAATGTGTGTTATTCCCCCCCTGGCCACCCCACTAATTTAAACCCAAAAATCAACCAGAACACCCAATTGTTTATAGATATTCTTATATTTCTGGTGCTTTTTAGTTAAATGCCTGTTGTGGAAGTTTTCTTGCAACAGCACAAAAAGGAGCAGGTTGGCTTTGTTTTGTGCTGCGTGTGGCTGGAAAGAGCTGAGGAGGCACTCTCAATGTTGGGTGAACACCAACCCTATGTTGCATAGTGGGaaccaaaggaaaaacaaaacaaaacaaaactattaatCCATGAATCtgtatacacatgtatgtatgtttcgGTCAATTCACTTAATGCATGTGACATgatcaaacaaaatgtgtttctttgtggCGTAATTTTTAAGATTTGACCCTTATAGATTTCCAACATGCCCTCGTTATCCCTCTAGATCCATGCCTTCCAACGCATTGAGCTTGATCGTGTCATatgcacacacccacacatccacatttcaaaacatatacatacatacattcatacatacatacacagtgcaTATATATTCGAAAGATTGTGAGTGTCTTGCAATGGTAGCACCaagaaatgcagtttaaatgaCAAGGAAAAGTAAttcctttttaatcttttgttttcagttacaaattCATGATCACCAGCtggttttgaattttaaaatgactgaacaAGAATTATCAacgttattgttttttaaaaactgataGACACGGGGAGACGTAAAACTAAGACATATTTTACTCTCCGGATGAAACAACTATAATTCTGtcatttagtttatttcaatgtgttGTGAGATGATATATTAGATGCTATGGCAGTAAGTAGTTAGATAAATCTACTGCCtgtgcagtaaaaaaaaaatggattacAATGCCTtacatataataatgtaaacaaaataaaaaagcagtatCCATACTGAAtactctctctctgtatgtgatAAGACAATGCAACATAGGGGGTTACAAAAAATTTcagtaatacaaaattcaaGGATTTCACTTAGACTTTGACTGTAAGCATATTGTAGAAAAatcctgttttctttgtttttttgatatTCACCAAATTAAACCTGaattccagaaaaaaaagaaaatctgctttaaaaacatttgttatgtGTACATCAATGAAAAGGGTTCATTTTGGAGATACCTGTggaattaatgttattattattggtattaacACAAGttacacacttttgtttttcattaggaAACACAACCAGCGGATTTGACCGCAGTTATTCAAGGGTTAAACAAACAacgatgacaacaacaacaaaacaacttcCAGAATGATCTTTCAATTCAAGGAACAGCGCAGAGCCAGCACATGTAACACAAAGCAGCGCAGTTGCTTAGTACTTCATATCGTCCCTGTAGGAGGACCGCAGCAGCTCCGCAAAACAACCTGAGTTACCTGTTCTTCTGTGTGGgggtgatttttctttttctttttgtgaataTAGTTAACCTTTGAACTGATATTACttgtaaaaaactaaatgaaaacacataTACATCTCATCTATTCATAGAAGCATCCTTTCTAAGCCAGCCActctccacccccccaacaAACTTCTTCTACGTAAACATACTCGACTGTACTCGGCTTACCGTGGAGAGTTAAATCCACTGTCTACTGTAATGCTGCTGCTGTCCATACTGTCAAGTCGGGCGGAATGGGCAGATTTTTGGCTGTTATTGTTGTCGCTTTCCTTTGGGCTCAGGAGGGTGAGGTTCTTCTCGAACTTCCGCTGCAAGTCTCTTTCCTTCTCCCGTTCGAGCAGCCACTGCATGGTTCCCCCACCCTCCCGGGTCTTCTCCTCCTCCGTGTTTTTGTGCGTTCCCTCGTCGGAGTCATCGTCGTCCGACACGTTGTAGTAGTCGAACGAGGGCTCCACCCCGGAGGCCTGGTCTGAGCCCTGCGGAGCCGACGCACCGGGGGAGACGGACAGCAGGCTGGGCTGCTCAAAGTGTTCGCAGTTGCTGAGGACCTCTGCGGATTTCACGTGCTGCGCTTTCCGCAACGTCCCCGATTTCTGGTAGCTGTTTTCTACATAGCCAACAGTCAATGCATTGTGGGGAGGTTTAAACAAAGTGTCCTTGCTAAATATCTCTTTCCTTTTGTCAGCAGCGCCGGGGTCCGCGTTGTTATGTTGGTGCATCAAACGTCCATTTGGTATCGGTTCCGGCGTCTGGCTCGGCACCGGTAAACTCACGCCATTGTGTCCCTTTGTCACGTCCTCTTTATACTCGCAGGACTCCCTGGTGAGGTGTGGGGTCTGCCGGTCTGCCGGAGAGATCTTTTTGACACCATCTGACAAGGTAAGAGTATCGTGATCATTTTTTCCTAGGGGGGAGGGAGCCGTGAGAACAGTTTCGTTGGACGTATTGCACTGAAAGTAATCGTCCGTTGAGGGCTTGGGCGAGCAGGGTTTGAGATCGCTGTAGGACGGTAAACTGTCTCTCATTTTGGACTGTTCCATTGGACTACTACAGACCTTGGAGTCCTCTGGGTTCCCCTTCCCCATGTCAGGCACGCATACCTCAGTGTTGAAGTTAGCAGCAGAAAGCAAGATTCTTTGATAGTGGTGAGCCTGAGAAGGCCTCAATGTACCATCATCGACATAGTAGCGGCCCTGCCCTCTGTCATCAGGGCTGCAGCCTTCGAAGTCCTCCGCTGTCCCAACAGAAGCATCGCCAAGCGGGCCTTTGGAGTTGTCCATCGAGCGAGACCTCTCCTTGGCCTTGCCCGACCTCTCGTTCCGAGATTTCCTGTCCTGGGTGTGGCTGTGGCTGCGGTGGACTTTGGAGTGGGAGGTCCCCCGGGAGGGTTCGGGAAAGGGCATCTCTGTTCTCCTTTTGGCAAGCTCTCCAGACACGTCCCACTCGGGAGTGACCGGGAAGTGTGACTCGACAACGCTGGGGTTGCTGTGCAAAATGAAGTTCTCCCCATTGTGCTCCACAGAGAAGGTGCCGTCGCGCGGAGACCTGACAAGCGAAGCGCTGTAGAAGTCATAATCCCGCTCCCCTGCCAGGTCTAAATGAGAACCCTCCGACGGGTCACCCTTGGATGCCCGGGTCTTACTGTGAGACCGGGATTTGCCGTGGGTTTTCCGATGGCCTCTGCTCCTCTTGCTCCTGGCGCTGTGCTGGGCCGAAGACCCGGCTTTGCTCCTCTGtgccttctcctcctccagcctCTTCATCAGTGCCGTGTGCCTCATGACGTTCTCCACCGTGAGGTCGGGGTTGATGCGGCGGATAATTTCCATCTCCACCTCCCTGGGGATAGTGGTTGGTGTGTCCTCGTCTCGCAGGGGCCACTCCTCCGGGGGGAACTGGGCTGAGAAGGTGGCCAGGTGTTTTGTCTTGTCCTTCTTGAAGCTCAGACGGAAGAGCTTGAGCCCAAATTTCTTGGACTGCTTCTCCCCGCTGCTGCCCCCTTCCTTGTGTTTGGTCAGGGTGTCCGTCTTGTACGAGAAATTCACCGTGCTTTTACTCTTTTCGGTGGCGGCGGCCTGGTACAGGGAAGGAGGGCAGTAGGAGTCTTTATGGTCCTTTGGGGACTTCCTCTGGAGGGTGGAGGCATGAATGCTGTGCATGTCATCACGGTAACAGTTATAGGAGTCGCAGTGGTTTTTGTGGTGGGGTCTTTCCCTCACGCAGCCTGAAGCAGAAGGGGTGATAGTTCCAGACTGAGGGGAGGTACATTGCTGCGGTCGGTCAGGTATCCTCTCGTCCAGGTGATACCATTTACTATTGGTCCGTATGAGGgagggggttataaaataagtcTGTGGGGTAACAATGAAGTAGCCTTCAGGGGTAGGGTAAATCTTCCTCTCCCTTACTAACATGTTTAACGTGTGCCGAAGAATTTCGGGGCTTGGCGTGGGAACACCtag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU126474 True 4507 TUCP 0.46 3 26373153 26377699

Neighbor

gene id symbol gene type direction distance location
AMCG00015867 NA coding upstream 17059 26333482 ~ 26356094 (+)
AMCG00015872 NA coding upstream 64421 26306627 ~ 26308732 (+)
AMCG00015870 NA coding upstream 67359 26270391 ~ 26305794 (+)
AMCG00015868 NA coding upstream 111664 26254913 ~ 26261489 (+)
AMCG00015869 NA coding upstream 119907 26242131 ~ 26253246 (+)
AMCG00015875 NA coding downstream 143491 26521190 ~ 26525630 (+)
AMCG00015876 NA coding downstream 149411 26527110 ~ 26562104 (+)
AMCG00015877 NA coding downstream 185022 26562721 ~ 26567558 (+)
AMCG00015882 dctd,LOC107671033,LOC107550883,LOC106602441 coding downstream 295045 26672744 ~ 26699429 (+)
AMCG00015886 NA coding downstream 1440137 27817836 ~ 27840281 (+)
G101273 NA non-coding upstream 2827 26370092 ~ 26370326 (+)
G101272 NA non-coding upstream 3450 26369485 ~ 26369703 (+)
G101271 NA non-coding upstream 5248 26367597 ~ 26367905 (+)
G101270 NA non-coding upstream 8094 26364295 ~ 26365059 (+)
G101116 NA non-coding upstream 647575 25667828 ~ 25725578 (+)
G101282 NA non-coding downstream 97361 26475060 ~ 26475349 (+)
G101306 NA non-coding downstream 191405 26569104 ~ 26572523 (+)
G101320 NA non-coding downstream 202014 26579713 ~ 26579971 (+)
G101340 NA non-coding downstream 329177 26706876 ~ 26707101 (+)
G101381 NA non-coding downstream 1063328 27441027 ~ 27441243 (+)
G101248 NA other upstream 108845 26263915 ~ 26264308 (+)
G101061 NA other upstream 1507601 24865089 ~ 24865552 (+)
AMCG00015796 hspa12b,LOC107583310,LOC107697252,LOC107721672 other upstream 3689258 22678837 ~ 22683895 (+)
G100338 herc3 other upstream 6104868 20267407 ~ 20268285 (+)
AMCG00015725 smad1 other upstream 7601187 18744887 ~ 18771966 (+)
G101400 NA other downstream 1512853 27890552 ~ 27992014 (+)
AMCG00015901 NA other downstream 2199801 28577500 ~ 28580829 (+)
AMCG00015918 g3bp2,LOC106578160,LOC107714642,LOC106610282 other downstream 3246346 29624045 ~ 29652938 (+)
G101752 NA other downstream 3788329 30166028 ~ 30168289 (+)
G101870 NA other downstream 4426390 30804089 ~ 30809238 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000000_01061972_01081591 STOX2A, STOX2B, STOX2 coding CI01000000 null 1060647 ~ 1082636 (+)