G101400


Basic Information

Item Value
gene id G101400
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 27890552 ~ 27992014 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU126637
CACAGGTTTTCGAATGCAAAATTAATGAGCAGCAATGCACCCGTTAGAAATCCACTTCTTTCCAATATGGACAACCCAAACTCTAACTGCAAATATACAGTCGGAACAAGAACAATACAGAACGGAGACATGTGGTAAACTTTTATTAAAACTCATACAAGATTGTACACCATTTACAAACAACCTACAGAATTCAGTAGCTCTTCGTTGCCTCGTAAGACTCCGGAAATGGAATAGACTTGTGTCCCGAGCCCATGACGAGAGGCAGGATGCCGGCATTTGGTACCACGTTCCACGACAGTGTTAAGGTGATGTTTTTATTGGCCCTTTCATGAAAAGAAGTCCGTTAGTACTAactttaaacacatacattgttgaagtgaaatacattgttttggttttgaaatcAGAATGGTGAAAACACCTGGTTTAAAAAACTTATGACAACTTTAATCTAAATGTATCAATacatgttcatattttgtaatatatcaTGGGTCTATGGTTAAAATAGTCAAGCAGAATAAGAAAAGCATTATGAATATATTCTCACTGGCACCGAGACCAGCTGTCTGCAAATCTGCACAAATTATAACACTGTAATATACTGCCATCTACTGGGCATTTAAACAATCATATGCAAGACCCATCCAAATGATTGCAATGGCAGCTTCGCATTAAAGAGTGACTTTATAGAAACCGTTAATTCCTCTCTTAGCTTTGGATTCGAAAGCACTAAAACAACTTAAGAGTTCCTTTAGACAGAATTATAAAAGTGTGACAGTAACTCATCCTTAGTTCTTACACAATACGGTTGTGAGAAGTTTTTTCCTAAGGTctataaatcatacatttgaGAAAAAGTGCCTGTGGTGTGAGAGAATCACTGACAACCACAAGAAAGCACTCGAGACTGAGACCAGGAGAAGAAAGGAAATTCAACAGTAAGAGAATATGCAACTTTTCCAAACGTGGCTTTGATTTGACTTTTGTTTCGGGAACACAATGTCACTGGCAAATGGGCCGAGACGTATTGTAACAAAGAAGGAATGTGCACAGAAGTATCTGCAGGGCAACagaatttgcatttaaagtacaaatacaacTGGCCGCCGTCTCCATTCAAAGGCATACATGGGGACTATAAATGCAAGAATAAGGAATAAGAATAAGGATGCATATCCCAGGCCTTACCGAAGACCACTGCCATCATCGAAAAAGAAATACTTTGATTTCATGTCCTTCAGGTTTAGCTTGGTGCTCTCTCCCCTGAGCACAATCTTGTCCCACAACACCACCTGGTTTAAGGCCTGGAAGAAaccacacattaaaacactaaTACATGTAATAAGATGCATCTAAATGTACAGTGAGAACTTCATTGTATACTCAAATGCATGACAGTTCAGTAAgcacaacatttaaatatgggGTAACAGGTTATATAATAGAACCACATATCAGACAGAAGTTGCTACTGAACTCAACTCACAGCACAACTCATTTTACTTCATTACTCAAACAGCAACAGAGACATCGAGGGAAAAACACACTTACGTTGCTTTTGGTTGCATATTCGGCTGACAGATACAGGAACAGCTGCTTGACATTCCAGTCAAATATGGGCTTCAAATCGGCCGAAATGTCAAAGGTGACGAAACCCAAGTCACTTCTCTCTCTTGGTCCCGTGAAGTCGTCCACATTTTTCCTAAGAAAAAGGTTTAAACCAATTGGTTACTTTTCCAGAAAAATGttccaggaaaaaaaacttttatttttacaataggCAGCTCAACAAGATTTGAAACAGATGACAATACAATCCAATTATACATCAGCATTGATTTCAGCAAGAGTCGTGCTTAACATGCCTTTTGCTGGTAATTTCTTGTTCAACTCAcaccatttaattacattaagagGGAAAGTAATAGTAATCTTGTAGTAATCATTTCATTACCCAGAGCACTAACACAGTCACAAAGAAGAGTCACTGAAAACAACACGATTGTAGCTGCCCATCAGCAAGCTGAGGATTCTCCAGCCGACTTCAGAGCCCCTTCCACACTAGCACACTGTCCCGGGGTGGGGAGGGTGCAATTGCATACACGTGTAGAAAGTGCACCGACTGAAGAACATAAGGAGGGATAGAGgaatgggaggaatagaactagatgaagtatcgcatgagaaagacctaggagtcta
>TU126639
ttttttttgttttttttGACATGTGGTAAACTTTTATTAAAACTCATACAAGATTGTACACCATTTACAAACAACCTACAGAATTCAGTAGCTCTTCGTTGCCTCGTAAGACTCCGGAAATGGAATAGACTTGTGTCCCGAGCCCATGACGAGAGGCAGGATGCCGGCATTTGGTACCACGTTCCACGACAGTGTTAAGGTGATGTTTTTATTGGCCGAAGACCACTGCCATCATCGAAAAAGAAATACTTTGATTTCATGTCCTTCAGGTTTAGCTTGGTGCTCTCTCCCCTGAGCACAATCTTGTCCCACAACACCACCTGGTTTAACGTTGCTTTTGGTTGCATATTCGGCTGACAGATACAGGAACAGCTGCTTGACATTCCAGTCAAATATGGGCTTCAAATCGGCCGAAATGTCAAAGGTGACGAAACCCAAGTCACTTCTCTCTCTTGGTCCCGTGGATGTTGACCGGGACGCTGCGGTCTTTGAAGGCCGTGGTGACAAAGCAGCCGAAAGTGAGCGCTGCCATCACGCTGAGCGAGAAGGCGAAGAGGGAGTTTGCCCTCGACAGCACGGTGTTCATGATCAATGCTCTGCGATGGCACAGACGCTGGACTCAACACACACCAGTCCCGCTGCCAGCTCTCCCGGAAGCCGCCGACTGCGAGCAGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU126637 True 2208 lncRNA 0.39 2 27987032 27989686
TU126639 False 676 TUCP 0.49 6 27890552 27992014

Neighbor

gene id symbol gene type direction distance location
AMCG00015886 NA coding upstream 50271 27817836 ~ 27840281 (+)
AMCG00015882 dctd,LOC107671033,LOC107550883,LOC106602441 coding upstream 1191123 26672744 ~ 26699429 (+)
AMCG00015877 NA coding upstream 1322994 26562721 ~ 26567558 (+)
AMCG00015876 NA coding upstream 1328448 26527110 ~ 26562104 (+)
AMCG00015875 NA coding upstream 1364922 26521190 ~ 26525630 (+)
AMCG00015890 NA coding downstream 14070 28006084 ~ 28018896 (+)
AMCG00015889 NA coding downstream 45797 28037811 ~ 28040997 (+)
AMCG00015893 LOC106610164,LOC106602380 coding downstream 156880 28148894 ~ 28167077 (+)
AMCG00015896 glra3,LOC106610166,LOC106602381 coding downstream 347398 28339412 ~ 28372662 (+)
AMCG00015894 NA coding downstream 392900 28384914 ~ 28386688 (+)
G101387 NA non-coding upstream 220799 27669432 ~ 27669753 (+)
G101381 NA non-coding upstream 449309 27441027 ~ 27441243 (+)
G101340 NA non-coding upstream 1183451 26706876 ~ 26707101 (+)
G101320 NA non-coding upstream 1310581 26579713 ~ 26579971 (+)
G101306 NA non-coding upstream 1318029 26569104 ~ 26572523 (+)
G101404 NA non-coding downstream 3796 27995810 ~ 27996946 (+)
G101486 NA non-coding downstream 453902 28445916 ~ 28446217 (+)
G101504 NA non-coding downstream 597559 28589573 ~ 28591059 (+)
G101555 NA non-coding downstream 1174921 29166935 ~ 29167213 (+)
G101556 NA non-coding downstream 1182763 29174777 ~ 29177324 (+)
G101275 NA other upstream 1512853 26373153 ~ 26377699 (+)
G101248 NA other upstream 1626244 26263915 ~ 26264308 (+)
G101061 NA other upstream 3025000 24865089 ~ 24865552 (+)
AMCG00015796 hspa12b,LOC107583310,LOC107697252,LOC107721672 other upstream 5206657 22678837 ~ 22683895 (+)
G100338 herc3 other upstream 7622267 20267407 ~ 20268285 (+)
AMCG00015901 NA other downstream 585486 28577500 ~ 28580829 (+)
AMCG00015918 g3bp2,LOC106578160,LOC107714642,LOC106610282 other downstream 1632031 29624045 ~ 29652938 (+)
G101752 NA other downstream 2174014 30166028 ~ 30168289 (+)
G101870 NA other downstream 2812075 30804089 ~ 30809238 (+)
G101930 NA other downstream 3270447 31262461 ~ 31287766 (+)

Expression


Co-expression Network