G101556


Basic Information

Item Value
gene id G101556
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 29174777 ~ 29177324 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU126834
ggatCACAAATAAATTTCAGTATTATTAGCAACGTGGAGTGAAGtctacatacagaaacaattactgcttacagttaatatccgagtgtattaaaaacttgctgAACACAGATTTCACACGACCCTGGTGCAATGCtaagttaaatataaacaataatttaagTTATATCAGAtgattttattaacattgtattaaCAACTAATCATCATGaatgtgcaggtctgttgtacaaCATCTCCAGAGACAATCAGTGTGAAGGTGAACATGATTTAGTTAaagtgtgcccatttacaacttaaatgtatgaatgaataaatacatacagcagaTCTGAGTTTCTCTCTAAAACATTatggactggtttaataaatgtatccataattctataaacgccatgactgaaacgtgcacacttaaTCGTGAAACGTATGTATTTTGGTTTAACTAACTTACACTAGTAAAGCGCATCTGCtaagtaaatgaaaaatgataaGGCAAAAAGTGTAgattgcagttacaaatctgtagtaagcgTAATAAGGGAGtaaagttgtgccatttaaaagacatatctactattattatttatttcttagcagatgcccttgtccagggcgacatacaaaatataagcgcaatacaaagtgcaaaattaaagtgcagttcaaggcataatacattttataaattcacaatttacacaagtgtatatgagatatacagtaaacaatatgtaagaatgaaaaagctgttaagtgcagacaagatgttaggtcaaagttaagagctaagggaaagggagcgtaggggatatcaaaataaacaatacaagtgcaagtaatgccAAGGCAGGaatatgacaaaacgttgtataagtgcaatcttacaggagaatgaatgactaaattacaagcaCAGTCTGAAAagtctactagcacatatcgtgatgatgattataataataacaacaaatatgtattgttattgttgcgcctgtataaatgaaataaagttttattatttctgaaaaaaatgttgtctatacatgtttagctcttcctaatattacttaacagaaatgtgtgtttattatgctgtttacaatcaggtaaagcagaaataatcacaaaatagccacaaaagtccttttcacgtcaggctctatcgctcatagacatgtctgtctttgatttGACAAACTAAACCCAGGATCGCTCTGCCTCCTCCCATAACAGGGATGGACTTGCtgcaatggcctggttttacagaaaGCTCTGGAACACGTCCGAGggcgcttaagccagtggaaatgaAGCATTAGTTATCAAAACTTTGTTACTAAAGGCAGAAATAACATGCAAGGCTCTGGACTGATTGCTGGGGGGTAGAATAGGAAAacataatacaacaaaaaacaaattaaatgtttctgaagACAAGAAGTATGCATTAGCCGCAAGTTAAATTGCTGCACCAAAGCCACCACTTTGCTTGGAAAAAGCCACATCACTTTGGGCCTCACAACCTGCAAACTACGTTGTGATTACATGGCAAGATTTTACTCATTaatatttcccaacatttttctttagaaatgttattaaaaatctgCATCCGACTTCATTATAAAGGACCTTCTTCCCCAGAGGATTCATTAAACAGAGGTTTCCATTTGAAACTGGGTTTGGGGGTCTTGGGATTTTCCTCTGCAAACACAAATCCACATAACAGGCTGGCAAGTGTTCAGTTCAGTTGTTAAGAAGCTGACATTAGCCTTTCCatggtttaattgtttatatatattgtagcaacCTAGCCATTTAATGGtcgctgttgaaataaaaagcaaaagaaacagaattCCTTGAAAACAAACTGACGATTATTAACCTTTTCAAAGAGGTAAATCGATTTCCCTTTTCCTCCATGTTCCAATCAACTGCACACAGATTAGACTTTCACATTAACTAACTCCTAGGCAACTCGACTCCTGGCGCATCAACACACCTGTATATATCCCCCTATCTGGTGACTCCCTCCCATCCAATCACCGCTATCAGGCTGTACCACCCGTGGACAGGGGGAGCTACACAATAACCCACAAACATCCCTCCCCAacccatatatatttatattactatgGAGGATGCCCACTTACCCCCAGGATATTACCTTTTGACCCCTGATTCTCTATTTCTAGTTTTGATCCATGAAAATTTGCTTTGCCACAGTATAACCCAATAAAGAATGTGACTTGTTAGTAACACAATTTCTACTGATACTGGATAATTAAAAACACCACCATTAATGCAACTACTACAAATAAAACCTATACAATTTACAGAATTGTACAGAAATCCCAAAAACTGCTTTCCTTTTGAGAAGTGACTGTAGTTTGAGGCATGTCGATTGTAGTATGTTTCTCTTTGTGAGAACTTTGTGAGATCTCCTGGTAACCAACCCGAAGCAAGAAAGTTTGCTGATCCAGacgttttatatttttgatgaGGCCTCGGCTGATACGAAAAGTACGCTGTGGGTCAANNN

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU126834 True 2548 lncRNA 0.36 1 29174777 29177324

Neighbor

gene id symbol gene type direction distance location
AMCG00015908 NA coding upstream 67198 29079429 ~ 29107579 (+)
AMCG00015902 hmgb2,LOC104945199 coding upstream 586497 28586425 ~ 28588280 (+)
AMCG00015900 hand2,LOC107558779,LOC107676684,LOC106610170,LOC106602386,LOC107752229,LOC107552491 coding upstream 631248 28541050 ~ 28543529 (+)
AMCG00015895 fbxo8,LOC107670846,LOC107752227 coding upstream 733465 28432038 ~ 28441312 (+)
AMCG00015897 NA coding upstream 775249 28396972 ~ 28399528 (+)
AMCG00015912 NA coding downstream 13782 29191106 ~ 29195801 (+)
AMCG00015911 NA coding downstream 75562 29252886 ~ 29259988 (+)
AMCG00015913 NA coding downstream 163160 29340484 ~ 29352375 (+)
AMCG00015915 NA coding downstream 223187 29400511 ~ 29409924 (+)
AMCG00015914 NA coding downstream 304945 29482269 ~ 29486582 (+)
G101555 NA non-coding upstream 7564 29166935 ~ 29167213 (+)
G101504 NA non-coding upstream 583718 28589573 ~ 28591059 (+)
G101486 NA non-coding upstream 728560 28445916 ~ 28446217 (+)
G101404 NA non-coding upstream 1177831 27995810 ~ 27996946 (+)
G101387 NA non-coding upstream 1505024 27669432 ~ 27669753 (+)
G101558 NA non-coding downstream 5207 29182531 ~ 29182869 (+)
G101560 NA non-coding downstream 8781 29186105 ~ 29186327 (+)
G101638 NA non-coding downstream 401205 29578529 ~ 29595891 (+)
G101678 NA non-coding downstream 528653 29705977 ~ 29728715 (+)
G101848 NA non-coding downstream 1417754 30595078 ~ 30641350 (+)
AMCG00015901 NA other upstream 593948 28577500 ~ 28580829 (+)
G101400 NA other upstream 1182763 27890552 ~ 27992014 (+)
G101275 NA other upstream 2797078 26373153 ~ 26377699 (+)
G101248 NA other upstream 2910469 26263915 ~ 26264308 (+)
G101061 NA other upstream 4309225 24865089 ~ 24865552 (+)
AMCG00015918 g3bp2,LOC106578160,LOC107714642,LOC106610282 other downstream 446721 29624045 ~ 29652938 (+)
G101752 NA other downstream 988704 30166028 ~ 30168289 (+)
G101870 NA other downstream 1626765 30804089 ~ 30809238 (+)
G101930 NA other downstream 2085137 31262461 ~ 31287766 (+)
AMCG00015959 NA other downstream 2556443 31733767 ~ 31746116 (+)

Expression


Co-expression Network