G101678


Basic Information

Item Value
gene id G101678
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 29705977 ~ 29728715 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU126990
ttttttaatttgttaaatttttattttgagaaaccTTAGTCCAAACATACATCTTCTCTTTTGTAACACAATATTTACACAATTCTTCCATGTTTTAGGGAGTGTCTTCACAGATTGTGTCATCGCGCCAGTGTCCAGTTAGCAAGACAGGAGCAAACTGCCATAATGCCTCCACAAGGTTTACAGAATAACACGTAACACCATCGCACGCTGTAAAGCTGACAGTGACCTCAGAGTAGAATTATCTAGTCCTGGTAAAAGGCCCAAACATGCCTTGCCTGGTACTTTACATGGTTATGCATGGCAACAAAGATGGTAGAATACTCCAAAATGTAAAACCCAACAAGCAATTTTAGTGCACATTAGTACACTCTTTTGTagaattatttttgaaattgtctGGTGggggtaaaaacaaacattatattaacattaaaacagtagTCCAATTTCTACTTTTGTGCTTTGTGCATTGGTGCATTGTTTAATGGAAATCAACTTCAACTCAGTTTGACTTCCTGTATGATTTCCCATTTCCCAGAATCACATTGTGTTggaaaattcactttttttttatttttttattaatttgttttaacaacTGACCAGATTAAAGCTTTTTCCTATTACTTGCACATCTTTTCCTGCACTGTATGTTGTTTTCTCAGCACACTGGCTGGCTGTCAATACTGTGTAGATAAGAATGGCCAAAGACGTCAATGATTTTAGACCAGGTGAGTTCCAGGGGAAGGTCAGATAAACACGCCAGGTTTGTGATCTGTAAACAGACCCCAATTCTAGCAGCAACACTTGCTTACTCTGGAAaccacacagcactgacatcaCGTCAACATCCAGTGGCGTTCAATAGCTGGTGATTTTATGGGCTGGATTCACAAACCCCGCTTAGCATTATTCTTAAACTCTcgcaatgttattttaggtagggtaATCCCAGACTAGGACTCTAATCTAGGTTTGAGAAACCAGCTCAAAGTGCATTTACTAAGTTCAAGCTGTCAAACTAAACAGTTGTTGACCAGGAAACAAAcacttaataattaaaaagtccacatttaaaaataaataaatgcgacgctttctaaaataattaattcactaTGAAATAAAGCTGATGGTTGATTTGCTAGTGTTTGACCGATTCCAAGACCTCAGCCGACTGAACATTACCCGGACAGAAGAAATCGGTTTAGCAGTTtcataattaacaattaataaacTGCACCGGAGTCAGTTTTGCGAGAGGTGTCTAAGCACTGGGAAGCAAACGACTTGAGTCTTGTTAAGTCTGTGcgcttttccatttaaaaactaCACCAACACATTTTCGAATGTTTCAAGTGTTATGGTTTAAACatcccttttttaaaataaatacaaaatcaggtGTGGGAGCATTTGTAGCCTGGGATTAAGCAATCCAAACATACCTAATAAACACTCAAACCCATTGTTCAAAATGAGTGTCCAGAATATCCATCTATTGATGAAGTACTGTTGTTCTGGGATTCACAATATGTAGcttaaaattgtgttaaaacTAGACATCATAAGCCGCTGTGGAGCATTCTGcgattacaaaataatttcaaacacaCCGTGTTAAAGAGACTCGAGCCACACAGCTGGCAGCGGTTAGGAACTGAAGCGTTGTGTGAGTTGTGTTCTCCCCACCCAGAGAGAGACATTTACAAGGaccacatatatacaaatatattgtactAAAACAGCAGCATTGTTTTGCCTGgtgacaaaatgtataaatattaatatatatacagttcataTTATACAAATACGAAAGATCTGTGTGCAAAGCACTTTGGAGCATCAGGACTGTACAGTCAGTTTCTGCGATCAATCTCCAGCGCAGACAATTCGAAACGCACATCTGGCGTGTCCTATGAAACATACACCTTCTCTCCCGCCAAAGCCTTCACTGCCAATGCTCCCCTTTTCCTCCTCATGAAACACCGCCAGTTTCAAATATACTTCACATCTGTGATTCACAAGCTTGTGCCTTGTTTTGTGGGTTTAAATGCAATCGTTAATTTGCCAGCTCTGTCAGAGCCACTCAGACACAATATGAACCCCCTTATCTGTCACGACGCACCTCCACACCCAGTGCGTCAGCTCTCTGACCTTTTTCTGCTGCCAATGAGGTAAAAGAGGCTGATCTATAAAAGTGAATACACTTCTCTACTCTGGCGTGGTTTCTGCACTACTTCAGTGTTCATAAACAAGGAGGTACATTTATATAACTCGTATGCCATGTCTTAGTGGGCAATGATACTCAGCTtatttgcaaaaaacaacaaccacttccgcacacacaaacacttacaCATACACTCAAGAAAGACTGACTGTCCAAAGTTATGAGGCAACCTGAAAAGCTAACGGAAACCCTTCTGGGAAAGGAGAACATGGTTCACAACCCATTAGCTGATGGGAAATAACATTAATCTCCAACGAAAATATTTCTATCATATGCCATGGAGTTTCACCTCCGTTACCACTGTGGACACATCTTCACCTTTTACCGCAACAGACCCAGGCAAAAGACGGTCCGAGTGCTGCGAAATATCTGCCCTCTAACAGGTGGCTGGGAGTGCGACAATTTGGGGTCGTCTTGCTGGTGTACAAACTGGAGATGGTGAAAAGGTGCGACATCACATTGAAAAGGATGTGACGGGACACGTAGACCATAAATACTGGGGCAGCGTTTGTAGGAAGCCGAGCTTTCAGCAAAATTATTCCTCCTTTCCCAGATGGATTTCATTAGGTTTTCTAGGCAGCTTGCATTATTTTCACTGAGATATCAAGTGCCATGGAGAAAAAGATTGTTCCCTTTGATCATGCCTTCAGTATAGGCTAACAAACCAgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU126990 True 2908 lncRNA 0.40 2 29705977 29728715

Neighbor

gene id symbol gene type direction distance location
AMCG00015919 NA coding upstream 26029 29665582 ~ 29679948 (+)
AMCG00015916 NA coding upstream 127142 29572501 ~ 29578835 (+)
AMCG00015917 NA coding upstream 154880 29549604 ~ 29551097 (+)
AMCG00015914 NA coding upstream 219395 29482269 ~ 29486582 (+)
AMCG00015915 NA coding upstream 296053 29400511 ~ 29409924 (+)
AMCG00015921 NA coding downstream 16713 29745428 ~ 29761435 (+)
AMCG00015928 NA coding downstream 350576 30079291 ~ 30082474 (+)
AMCG00015930 NA coding downstream 355294 30084009 ~ 30110354 (+)
AMCG00015929 NA coding downstream 406820 30135535 ~ 30154322 (+)
AMCG00015932 NA coding downstream 448535 30177250 ~ 30183373 (+)
G101638 NA non-coding upstream 110086 29578529 ~ 29595891 (+)
G101560 NA non-coding upstream 519650 29186105 ~ 29186327 (+)
G101558 NA non-coding upstream 523108 29182531 ~ 29182869 (+)
G101556 NA non-coding upstream 528653 29174777 ~ 29177324 (+)
G101555 NA non-coding upstream 538764 29166935 ~ 29167213 (+)
G101848 NA non-coding downstream 866363 30595078 ~ 30641350 (+)
G101935 NA non-coding downstream 1544457 31273172 ~ 31316692 (+)
G101964 NA non-coding downstream 1944772 31673487 ~ 31674507 (+)
G101965 NA non-coding downstream 1949997 31678712 ~ 31679106 (+)
G101966 NA non-coding downstream 1954350 31683065 ~ 31683412 (+)
AMCG00015918 g3bp2,LOC106578160,LOC107714642,LOC106610282 other upstream 53039 29624045 ~ 29652938 (+)
AMCG00015901 NA other upstream 1125148 28577500 ~ 28580829 (+)
G101400 NA other upstream 1713963 27890552 ~ 27992014 (+)
G101275 NA other upstream 3328278 26373153 ~ 26377699 (+)
G101248 NA other upstream 3441669 26263915 ~ 26264308 (+)
G101752 NA other downstream 437313 30166028 ~ 30168289 (+)
G101870 NA other downstream 1075374 30804089 ~ 30809238 (+)
G101930 NA other downstream 1533746 31262461 ~ 31287766 (+)
AMCG00015959 NA other downstream 2005052 31733767 ~ 31746116 (+)
AMCG00015966 NA other downstream 2219760 31948475 ~ 31951870 (+)

Expression


Co-expression Network