AMCG00016017 (robo2)


Basic Information

Item Value
gene id AMCG00016017
gene name robo2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 955648 ~ 996162 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016017
gTATGACATTAAGGACGATTACATGCTCCGCATTAAAAAGGCTTTTAGCAGTGATGAAGGCACTTACACCTGCATAGCTGAGAACCGTGTGGGCAAAGTGGAGGCGTCAGCGTCACTCACAGTCAGGGCACCTCCTCAGTTTGTGGTCAGGCCAAGGGACCAGATTGTGGCTCAGGGACGAATTGCCACTTTCCCCTGTGAGACCAAAGGCAACCCTCAACCGGCCGTGTTCTGGCAGAAGGAAGGCAGCCAGCCCCTGCAGCCTAGCAGCAGATTTTCCGTTTCCCAAAGTGGAGATCTAACCATCTCTAACGTACAGCGCTCAGATGCAGGCTACTACATCTGTCAGGCCCTCACCGTGGCTGGCAGCATCTTAGCCAAGGCCCAGCTGGAAGTTACTGATGTGCTGACAGACAGGCCCCCACCCATTATTCGCCAAGGCCCAGCCAATCAGACCCTCGGTGTGGACAGCTTGGCCTTACTGAAGTGCCAGGCATCAGGAGACCCCATCCCTACAATCAGCTGGTTGAAGGATGGGGTGAGTCTGCTGGGCAAGGACTCCAGAATGTCTCTCCAGGACCTTGGCAGCCTACAAATTAAGAACATACGGTTATCTGATTCTGGTATATATACCTGTGTCGCTGCGAGCTCCAGTGGGGAAACATCCTGGAGTGCCTTTCTTGAAGTGCGAGAATCCACTGGTGTTACAGTAACCAAGAATCATGATGCCACTGAGCTTCCAGGCCCTCCCTCCAAACCCCAGGTCACTGATGTCACAAAGAACAGCGTCTCTTTGTCCTGGCAACCAGGACTGACCGGGGGATCACCCATCACTTCCTATGTCATAGAGGCTTTTAGCCAGTCAGTGAGCAACAGTTGGCAGACAGTCGCAGACCACGTGAAGACCACACTCTACACTGTCCGAGGACTTCGGCCCAACACCATATATCTGTTCATGGTGCGAGCTGTGAACACACAGGGCCTGAGTGACCCCAGTCCAATGTCTGAACCAGTGCGCACCCAAGATATCAGTCCCCCTGCCCAGGGAGTTGACCACCGACATGTGCAAAAGGAGCTGGGGGAAGTGATTATTCGGCTGCACAACCCTGTCGTTCTCAGCCCCACAACCATTCAGGTTACTTGGACGGTTGACCGGCAATCACAGTTCATTCAGGGCTATCGAGTGCTATACCGGCAAACCTCAGGACTGCCCTCTCCCTCGAGCTGGCAGAGTCAAGATGTCAAAGTGCCAACGGAGAGGAGCATTGTGCTGTCCAGCTTGAAGAAGGGCATAATTTATGAGATCAAGGTCCGCCCCTATTTCAACGAATTCCAAGGAATGGACAGTGAATCCAAGTCTGCTCGCACCACTGAAGAAGCACCGAGCGCCCCCCCGCAGTCTGTCACGGTCCTGATGGTGGGGAATCACAACAGCACCAGCATCAGCATCTCCTgggaccccccacccccagaccACCAAAACGGGATCATCCAGGAGTACAAGATCTGGTGTCTTGGCAACGAGACCCGCTTTCATGTCAACAAGACCGTGGATGCTGCGATTCGCTCCGTGCTCATTGGAGGCCTCTACCCTGGAATCCAGTACCAGGTGGAAGTGGCGGCCAGCACCAGCGCTGGTGTGGGGGTGAAGAGTGAACCCCAGCCCATCAGCATAGGCAACATCAGGGATGTCATTGTGAGTGGAGCTGGGAGCAACAACAGCATCACCGAGCAAATCACAGACGTGGTCAAGCAGCCTGCCTTCATCGCTGGCATCGGAGGGGCCTGCTGGGTCATTTTGATGGGATTCAGTATCTGGCTCTACTGGCGCCGAAAGAAGCGAAAGGGTCTCAGCAACTAC

Function

symbol description
robo2 Predicted to enable axon guidance receptor activity. Acts upstream of or within several processes, including axon development; regulation of extent of cell growth; and sensory perception of touch. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including digestive system; dorsal fin; nervous system; spleen; and trigeminal placode. Human ortholog(s) of this gene implicated in vesicoureteral reflux. Orthologous to human ROBO2 (roundabout guidance receptor 2).

NR:

description
PREDICTED: roundabout homolog 2 isoform X2

GO: NA

KEGG:

id description
K06754 ROBO2; roundabout, axon guidance receptor 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016017 True 1861 mRNA 0.55 12 955648 996162

Neighbor

gene id symbol gene type direction distance location
AMCG00016016 LOC106613191 coding upstream 156279 789186 ~ 799369 (+)
AMCG00016014 NA coding upstream 685728 257227 ~ 269920 (+)
AMCG00016009 zgc:112408,LOC107590289,LOC107666604,LOC107705181,LOC107721840 coding upstream 733764 205890 ~ 221884 (+)
AMCG00016008 NA coding upstream 862798 69832 ~ 92850 (+)
AMCG00016015 NA coding downstream 13626 1009788 ~ 1035222 (+)
AMCG00016021 NA coding downstream 1175547 2171709 ~ 2369480 (+)
AMCG00016025 NA coding downstream 1576407 2572569 ~ 2596847 (+)
AMCG00016034 NA coding downstream 1939793 2935955 ~ 2946364 (+)
AMCG00016031 NA coding downstream 2001704 2997866 ~ 2998285 (+)
G10234 NA non-coding upstream 606753 348522 ~ 348895 (+)
G10230 NA non-coding upstream 639692 294121 ~ 315956 (+)
G10218 NA non-coding upstream 712566 225223 ~ 243082 (+)
G10185 NA non-coding upstream 754646 200290 ~ 201002 (+)
G10263 NA non-coding downstream 201467 1197629 ~ 1197883 (+)
G10342 NA non-coding downstream 1254264 2250426 ~ 2250627 (+)
G10345 NA non-coding downstream 1261151 2257313 ~ 2257732 (+)
G10352 NA non-coding downstream 1370469 2366631 ~ 2416786 (+)
G10356 NA non-coding downstream 1428923 2425085 ~ 2425481 (+)
G10350 NA other downstream 1316436 2312598 ~ 2313159 (+)
G10371 LOC105010782,LOC106603266 other downstream 1489380 2485542 ~ 2487751 (+)
AMCG00016030 NA other downstream 1763185 2759347 ~ 2812231 (+)
G10739 foxo1 other downstream 3430984 4427146 ~ 4428059 (+)
AMCG00016079 NA other downstream 5645496 6641658 ~ 6661668 (+)

Expression


Co-expression Network