AMCG00016020 (robo1)


Basic Information

Item Value
gene id AMCG00016020
gene name robo1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 1313779 ~ 1341211 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016020
ATGGAGTGCCAACCCCCCCGTGGGCACCCAGAGCCCACCATCTCCTGGAAAAAAGACGCCGTGCCCATCGATGACAAAGATGAGAGAATCACGATCAGAGGAGGAAAGCTGATGATCACAAATGCACGGAAGAGTGACGCTggaaaatatgtgtgtgtgggcacCAATATGGTGGGAGAGCGGGAGAGCGAGATTGCCGAACTCACTGTGTTAGAGCGGCCTAACTTTGTGAAAAAGCCCAACAGCCAGGTGGTCCTGGTGGACGACAGTGTGGAGTTCAGATGTGAAGCCAGAGGAGACCCTGTGCCCACAGTGCGGTGGAGGAAGGAGGATGGAGACTTGCCCAAAGGAAGGTTTGAGATTCGTGATGATCACACACTGAAGATACGGCGGGTGACAGCGGCTGATGTGGGCTCCTATACCTGCGTGGCAGAAAACATGGTGGGCAAGGCTGAAGCCCCGGCCACCTTGACAGTCCATGTACCTCCAGCCTTTGTGGTCCGTCCCCGAAACCAGGTTGTGGCTGTGGGGAGGACTGTGACATTCCAGTGTGAGGCCACAGGCAACCCCCAGCCAGCCATCTTCTGGCAGCGAGAGGGGAGCCAGAATCTGTTGTTCTCCTACCAGCCCCCTCAGCCGTTAAGCCGGTTCTCCGTCTCCCAGAGTGGGGATCTGACTATCACGGACGCAGAGAGGTCAGACGTGGGATACTACAGCTGCCAGGCTCTGAATATCGCCGGGAGCGTCATCACCAAGGCCCTTCTGGAAGTCACCGATGGTAAAGTGGGGTCAAAATGA

Function

symbol description
robo1 Predicted to enable axon guidance receptor activity. Acts upstream of or within axon guidance and endocardial progenitor cell migration to the midline involved in heart field formation. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in basal plate midbrain region; epidermis; nervous system; pectoral fin; and pharyngeal arch. Orthologous to human ROBO1 (roundabout guidance receptor 1).

NR:

description
PREDICTED: roundabout homolog 1 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016020 True 798 mRNA 0.57 6 1313779 1341211

Neighbor

gene id symbol gene type direction distance location
AMCG00016018 NA coding downstream 1694 1263535 ~ 1312085 (-)
AMCG00016010 NA coding downstream 1116881 187079 ~ 196898 (-)
AMCG00016012 NA coding downstream 1132242 159706 ~ 181537 (-)
AMCG00016013 NA coding downstream 1159806 149601 ~ 153973 (-)
AMCG00016011 NA coding downstream 1200214 90982 ~ 113565 (-)
AMCG00016019 robo1,LOC106613191 coding upstream 117861 1459072 ~ 1459832 (-)
AMCG00016023 NA coding upstream 1121860 2463071 ~ 2515080 (-)
AMCG00016022 NA coding upstream 1178332 2519543 ~ 2527277 (-)
AMCG00016026 NA coding upstream 1254803 2596014 ~ 2600477 (-)
AMCG00016027 NA coding upstream 1265497 2606708 ~ 2671709 (-)
G10233 NA non-coding downstream 990779 322629 ~ 323000 (-)
G10229 NA non-coding downstream 1042256 270921 ~ 271523 (-)
G10214 NA non-coding downstream 1112663 200279 ~ 201116 (-)
G10298 NA non-coding upstream 192190 1533401 ~ 1533655 (-)
G10307 NA non-coding upstream 355594 1696805 ~ 1705596 (-)
G10314 NA non-coding upstream 502717 1843928 ~ 1844160 (-)
G10319 NA non-coding upstream 566714 1907925 ~ 1908294 (-)
G10321 NA non-coding upstream 577218 1918429 ~ 1919336 (-)
AMCG00016024 ilk,LOC106581335 other upstream 1191406 2532617 ~ 2554946 (-)
G10420 LOC101154678 other upstream 1369188 2710399 ~ 2710685 (-)
AMCG00016029 NA other upstream 1442914 2784125 ~ 2846357 (-)
G10478 NA other upstream 1693211 3034422 ~ 3035183 (-)
AMCG00016046 NA other upstream 2187631 3528842 ~ 3542536 (-)

Expression


Co-expression Network