AMCG00016023


Basic Information

Item Value
gene id AMCG00016023
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 2463071 ~ 2515080 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016023
ATGTCGCTGGAGAAGCCATCGGACCTGGCTAATGAGAATACCTGCCTGCCGCCCTCCTTGACTCTGAATCTGCGCTCCCCCCACAGTGTCTTGCTAAACGCCGAGGTGGGCAAAGGCACCTCCTCACCCAAGAGTCACCACATCTACGCCTCCACAGACCTGCAGGCCACCATGGGGCTGGAGCAGCCCAATGATGAACCCTCCAATGAGCTGGCCAAGCgtaaggaggaggagagggccAAGAACCAAGAGAATGAGCAGGGACACAAGCAAGCCCCCAACGAGCCCGCCAATGCCAAGTGGGTGAAGGAAGGCCAGAACCAGTTGCGCAAAGTGGCTGAGAAGCAGGATCTGAACCGCAACCCCCCAATGGAGGAGAAGAATGTCTCCACCAAGGGCTTCCTCTCCCTCTATCCTGCTACTCTAGACCTGGAGCTCTCAAGCAAGAATTCTGCCAACCAGCCCCTGGTTATCGACACCTCACAGGTGCCAGAGGGGAAGGGGGGCAGGGaagagacagaggaggaggaagaagaggatgaGGCACCGGTTACCGGGGAGAAAGACACAGACTCATCctcagagacacagagcagCAGCGAGTCGCGGAAGGACAGCTCCAAAAATGCCTGCCTCTTCTTCCGGACAAGGAACATGGCTCCCAGTGATGAGGATTCAAGCTGGACCACTCTGTCTCAGGGCAGCACTACCAACAGCACCCCTGATGGTGACTCAGAGTCTTTCTGGAACCGTAGTGCCTTTGAGACAGACACTGACCTGCCGGCGGGCTGGATGCGGGTTCGAGACACTTCGGGGACTTACTACTGGCACATCCCCACTGGTACCACCCAGTGGGAGCCCCCCTCTCCTCTGGAGGAGGGCCAGGGCTCGGGCAGGCCCTCCAGCACATCTCCAGGGATCACCCCCTCTGAGGAGCAGCAGCTGACCTGGACTGGTCTATCTCGCCCTGACAAGTTTGAGGACGGGGAATTTTGGAAGGACCTGCAGGCAGATGATGTGTCCTCAGACCGCAGCTTGAAGGAGTTTGAGGGAGCAACACTGCGCTATGCTTCCATCAACCTAAGCTGCTCGCAAACAGAAGAGGAAGACAAGCTGGGCTCGATCACCACTGATGTGGAAGCAAAGTGTTTTGCAGTGCGCTCTCTGGGCTGGGTGGAGATGTCAGAAGAGGACATGGCTCCGGGCAAAAGCAGCATCGCAGTCAATAACTGCATCCGCCAGCTTTCCTACCACAAACACAACCTGCACGACACAGCAGGCATCTGGGGAGAGGGTAAAGACATGCTGCTCGTCCTGGAGAATGAGACCCTGAATCTGATTGACCCCCTTGGCCAGACGCTGCTGCACTCACAGCCAATCGTCAGCATCCGTGTCTGGGGTGTGGGCAGAGACAACGGGAGttttacacCTGTCACAGGGAAACTACAGCATAGGTTTTTCAATGTCACTGGAATATCTTCCTCTATAATATCTTTTGGCGAACACCACAGCTTCTATGGAGTGGAGATGGATAGTGTGAAGGTGGACACAGTGACTGCAGTACACTACCTCTCCCTGTGTCCCAGAttgcagcagaaaaaaaaaacaggaaacagaaaaaataagaGTATGGATATAATAAATGTGGCTTTAGAAGCGGTGCTTCTTTCCAAAGACAAAAATGAGTGGATGCCAGTGACGGTCAACGTGGCTTCAGCAACACTCACCGTCATTGCTGCAGAGACAGAGGAGGTGCTGTCGGAGTGCCGTGTACGCTTCCTGTCCTTCATGGGTGTTGGGAAGGACGTCCACACGTTTGCCTTCATCATGGCAGAGGGCCCGGGGAACTTCATCTGCCACATGTTCTGGTGTGAGCCCAATGCCGCCAGTCTCTCAGAGGCAGTGCAGGCCGCGTGCATGCTCCGGTATCAGAAGTGTCTGGATGCGCGGCCCCCCagcaccagctccagctcctgcCTCCCGGCTCCACCTGCCGACTCTGTAGCCCGCCGAGTGGGGTCCAGCGTCAAGAAGGGAGTCCAGAGCCTGCTTGGGAGCTTTAAGCAGAAACGGGCAGGAGCCCAGACCCCGACCTCTGGCTGGACGGTGGCAGTGGCCGGGACCTCTAGCTGGGCGGACAGGGTTACCTACAACCCCTAC

Function

GO: NA

KEGG:

id description
K04529 APBB1, FE65; amyloid beta A4 precursor protein-binding family B member 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016023 True 2160 mRNA 0.57 13 2463071 2515080

Neighbor

gene id symbol gene type direction distance location
AMCG00016019 robo1,LOC106613191 coding downstream 1003239 1459072 ~ 1459832 (-)
AMCG00016020 robo1 coding downstream 1121860 1313779 ~ 1341211 (-)
AMCG00016018 NA coding downstream 1150986 1263535 ~ 1312085 (-)
AMCG00016010 NA coding downstream 2266173 187079 ~ 196898 (-)
AMCG00016012 NA coding downstream 2281534 159706 ~ 181537 (-)
AMCG00016022 NA coding upstream 4463 2519543 ~ 2527277 (-)
AMCG00016026 NA coding upstream 80934 2596014 ~ 2600477 (-)
AMCG00016027 NA coding upstream 91628 2606708 ~ 2671709 (-)
AMCG00016028 timm10b coding upstream 199889 2714969 ~ 2715852 (-)
AMCG00016041 NA coding upstream 948586 3463666 ~ 3475993 (-)
G10357 NA non-coding downstream 37591 2425021 ~ 2425480 (-)
G10346 NA non-coding downstream 205356 2257416 ~ 2257715 (-)
G10343 NA non-coding downstream 212430 2250401 ~ 2250641 (-)
G10324 NA non-coding downstream 375521 2087271 ~ 2087550 (-)
G10321 NA non-coding downstream 543735 1918429 ~ 1919336 (-)
G10415 NA non-coding upstream 181589 2696669 ~ 2702512 (-)
G10432 NA non-coding upstream 221101 2736181 ~ 2736474 (-)
G10435 NA non-coding upstream 234578 2749658 ~ 2749864 (-)
G10440 NA non-coding upstream 250414 2765494 ~ 2767457 (-)
G10464 NA non-coding upstream 358144 2873224 ~ 2963628 (-)
AMCG00016024 ilk,LOC106581335 other upstream 17537 2532617 ~ 2554946 (-)
G10420 LOC101154678 other upstream 195319 2710399 ~ 2710685 (-)
AMCG00016029 NA other upstream 269045 2784125 ~ 2846357 (-)
G10478 NA other upstream 519342 3034422 ~ 3035183 (-)
AMCG00016046 NA other upstream 1013762 3528842 ~ 3542536 (-)

Expression


Co-expression Network